Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 2.9e-162 575.1 275 100.0
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.2e-146 522.3 274 91.2
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 7.2e-137 490.7 275 85.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.6e-128 463.0 282 79.4
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 8.0e-128 460.7 276 80.8
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.8e-127 459.5 283 79.9
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.9e-122 442.2 273 78.4
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 5.7e-118 427.9 284 73.6
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.3e-117 426.8 276 76.8
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 8.3e-117 424.1 276 76.8
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.7e-114 416.4 282 73.0
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 4.2e-113 411.8 270 72.2
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 5.5e-113 411.4 270 72.2
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 3.6e-112 408.7 275 71.3
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 4.7e-112 408.3 272 73.9
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.5e-110 403.3 275 72.0
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 4.4e-110 401.7 275 72.0
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 7.5e-110 401.0 275 70.2
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.1e-108 397.1 273 70.3
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.1e-108 397.1 276 71.4
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.4e-108 396.7 277 71.5
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.8e-108 396.4 275 70.5
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 4.1e-108 395.2 273 71.1
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 9.1e-108 394.0 277 70.4
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 2.7e-107 392.5 273 70.7
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-107 392.1 276 70.3
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.5e-107 392.1 272 70.6
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.5e-107 392.1 273 69.6
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.5e-107 391.7 272 69.5
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 7.7e-107 391.0 273 69.6
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 3.8e-106 388.7 273 69.2
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 5.0e-106 388.3 273 68.9
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 6.6e-106 387.9 273 67.8
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 6.6e-106 387.9 275 69.1
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 8.6e-106 387.5 273 67.8
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.1e-105 387.1 272 69.9
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.9e-105 386.3 271 69.4
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 3.3e-105 385.6 275 69.5
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.3e-105 385.6 280 68.2
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 4.2e-105 385.2 276 69.9
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 7.2e-105 384.4 277 69.7
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.6e-104 383.3 279 68.5
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.8e-104 382.5 279 68.5
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 3.6e-104 382.1 284 66.5
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.0e-103 380.6 275 66.5
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.0e-103 380.6 273 68.1
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.3e-103 379.4 273 68.9
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.5e-102 376.7 279 68.1
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 2.6e-102 375.9 290 64.1
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 4.4e-102 375.2 277 66.8
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 5.7e-102 374.8 273 66.3
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 2.2e-101 372.9 273 64.8
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.2e-101 372.9 275 65.5
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 3.7e-101 372.1 273 64.8
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 4.9e-101 371.7 277 67.1
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.3e-101 371.3 279 67.7
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.3e-101 371.3 271 67.2
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 8.3e-101 370.9 273 65.9
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 8.3e-101 370.9 279 67.7
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.4e-100 369.4 273 65.2
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 2.4e-100 369.4 274 65.0
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 5.4e-100 368.2 273 65.9
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 3.5e-99 365.5 279 66.7
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 3.5e-99 365.5 275 65.1
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 4.6e-99 365.2 273 64.8
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 5.9e-99 364.8 273 65.9
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.3e-98 363.6 272 64.7
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.3e-98 363.6 274 63.9
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.7e-98 363.2 283 66.4
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.7e-98 363.2 273 65.6
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 2.3e-98 362.8 273 64.8
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.9e-98 362.5 275 65.1
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 3.9e-98 362.1 308 60.1
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 5.0e-98 361.7 272 65.1
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 5.0e-98 361.7 272 65.1
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.9e-97 359.8 275 64.0
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.5e-97 359.4 273 63.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 3.3e-97 359.0 273 63.4
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 3.3e-97 359.0 273 63.4
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 4.3e-97 358.6 272 63.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 9.5e-97 357.5 273 65.6
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.2e-96 357.1 273 63.0
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.6e-96 356.7 273 64.5
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.1e-96 356.3 273 65.9
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.8e-96 355.9 273 63.4
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 3.6e-96 355.5 273 63.0
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 6.1e-96 354.8 273 63.7
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.0e-95 354.0 271 65.7
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.8e-95 353.2 272 64.3
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 5.2e-95 351.7 276 62.3
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 5.2e-95 351.7 273 62.6
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 5.2e-95 351.7 273 62.6
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 6.8e-95 351.3 273 64.8
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 8.9e-95 350.9 286 61.2
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.2e-94 350.5 277 63.2
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.2e-94 350.5 275 65.1
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.5e-94 350.1 273 60.8
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 3.4e-94 349.0 273 62.6
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 4.4e-94 348.6 273 62.6
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 6.4e-93 344.7 226 74.3
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.4e-92 343.6 333 54.7
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 3.2e-92 342.4 254 68.1
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.2e-92 342.4 227 70.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 5.4e-92 341.7 272 60.3
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 2.7e-91 339.3 273 62.3
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 3.5e-91 339.0 273 63.4
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 4.6e-91 338.6 272 59.9
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.0e-91 338.2 273 61.5
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.6e-88 330.1 273 60.8
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 5.2e-87 325.1 226 69.0
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 5.2e-87 325.1 210 75.2
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 5.2e-87 325.1 274 58.0
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 5.2e-87 325.1 257 63.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 6.8e-87 324.7 197 81.2
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.0e-86 323.2 228 67.1
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.7e-85 320.1 228 67.1
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 4.1e-84 315.5 212 72.6
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 7.1e-84 314.7 277 58.1
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.6e-83 313.5 226 66.4
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 5.1e-82 308.5 257 60.7
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.6e-82 308.1 212 69.8
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 9.5e-81 304.3 205 73.7
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 3.6e-80 302.4 289 52.2
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 3.1e-79 299.3 205 71.7
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.1e-76 290.8 246 56.1
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 4.1e-76 288.9 245 57.1
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.7e-75 286.2 219 64.8
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 2.7e-75 286.2 273 54.2
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 4.7e-72 275.4 185 72.4
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.2e-70 270.8 244 57.8
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-70 270.0 362 46.4
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 6.4e-69 265.0 245 54.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.1e-68 264.2 327 47.7
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.9e-65 253.4 274 46.7
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 2.6e-62 243.0 197 60.9
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.7e-61 240.4 292 49.0
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 8.7e-58 228.0 247 49.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 3.6e-56 222.6 144 72.9
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.8e-55 220.3 204 55.9
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.0e-50 204.5 194 52.6
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 6.7e-50 201.8 224 48.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.5e-49 199.9 141 63.8
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 8.1e-48 194.9 193 49.7
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.8e-47 193.7 126 73.8
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.5e-44 183.3 129 70.5
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.6e-43 180.6 254 37.4
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.0e-37 159.1 139 59.7
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.6e-35 154.1 329 31.6
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 2.7e-35 153.3 275 34.9
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.6e-32 144.1 96 67.7
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-32 144.1 129 57.4
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 6.9e-31 138.7 178 48.3
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.6e-27 127.5 211 37.4
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 8.8e-26 121.7 101 58.4
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-25 120.6 181 39.2
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-18 95.5 79 58.2
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 5.7e-17 92.4 55 81.8
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 5.7e-17 92.4 55 81.8
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.8e-16 90.1 80 57.5
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.7e-16 89.7 124 37.9
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.2e-16 88.6 73 58.9
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.9e-12 77.4 55 63.6
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 6.1e-11 72.4 59 57.6
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.1e-09 68.2 56 50.0
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 2.0e-06 57.4 40 60.0
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 2.0e-06 57.4 40 60.0
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.9e-06 55.8 34 79.4


User provided reference genes

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