Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 7.3e-234 813.5 414 100.0
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 4.0e-224 781.2 414 96.1
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 6.0e-212 740.7 414 90.3
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 2.5e-210 735.3 414 89.6
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 2.4e-205 718.8 415 87.0
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 3.9e-203 711.4 417 87.8
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.5e-202 709.5 415 85.3
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 1.9e-202 709.1 417 87.3
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 4.3e-202 708.0 415 85.3
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.3e-201 706.4 415 85.3
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.4e-197 693.0 414 83.3
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 2.1e-196 689.1 414 82.1
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.0e-195 686.8 414 83.3
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.3e-195 686.4 414 83.6
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 2.3e-195 685.6 418 82.8
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 3.0e-195 685.3 417 83.0
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 3.0e-195 685.3 414 82.1
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 2.1e-193 679.1 414 80.7
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 4.8e-193 677.9 413 82.3
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.3e-192 674.5 414 80.9
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.2e-191 673.3 414 81.6
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.2e-191 673.3 414 80.7
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.5e-191 672.9 411 81.8
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.5e-191 672.9 414 80.7
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 2.6e-191 672.2 414 80.7
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.8e-191 671.0 414 80.4
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.0e-190 670.2 414 80.7
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.3e-190 669.8 414 80.9
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.2e-190 669.1 413 81.4
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.9e-189 666.0 414 80.9
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.9e-189 666.0 403 83.4
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.6e-188 661.4 416 79.8
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 3.9e-187 658.3 414 78.3
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.9e-187 658.3 414 78.7
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 6.7e-187 657.5 416 79.6
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 6.7e-187 657.5 414 80.0
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 8.7e-187 657.1 413 78.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 5.7e-186 654.4 413 80.6
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.3e-185 653.3 414 79.7
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.1e-184 650.2 414 79.2
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.1e-184 650.2 411 78.8
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.8e-184 649.4 414 80.7
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.4e-184 649.0 414 79.2
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 5.3e-184 647.9 415 79.0
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 5.3e-184 647.9 412 79.4
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.2e-183 646.7 415 79.3
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 3.4e-183 645.2 416 79.1
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 4.5e-183 644.8 412 78.6
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.0e-182 643.7 414 77.8
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 3.8e-182 641.7 415 77.8
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 8.4e-182 640.6 414 78.0
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 3.2e-181 638.6 414 78.5
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 3.2e-181 638.6 414 76.6
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 4.2e-181 638.3 414 76.6
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 5.5e-181 637.9 414 78.5
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 5.5e-181 637.9 414 75.6
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.6e-180 636.3 411 77.4
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.7e-180 635.6 414 77.5
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 1.0e-179 633.6 414 76.3
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.8e-179 632.9 414 75.1
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 3.0e-179 632.1 414 76.1
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.5e-178 629.0 412 76.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 4.3e-178 628.2 446 71.7
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 5.7e-178 627.9 414 75.8
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.2e-177 625.9 415 75.4
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 4.8e-177 624.8 416 76.7
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.4e-176 623.2 414 75.6
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.4e-176 623.2 415 74.2
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 4.1e-176 621.7 416 74.5
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 9.0e-176 620.5 415 76.1
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 3.4e-175 618.6 415 74.5
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 5.0e-174 614.8 414 74.2
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.4e-173 613.2 415 73.7
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.4e-173 613.2 415 73.7
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.5e-173 612.5 415 73.5
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.5e-173 612.5 415 74.9
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 5.5e-173 611.3 415 73.3
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.5e-173 611.3 415 74.9
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 7.2e-173 610.9 415 73.7
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.6e-172 609.8 415 74.5
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.6e-172 609.8 415 73.5
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 1.6e-172 609.8 415 73.0
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.1e-172 609.4 414 73.9
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.1e-172 609.4 457 67.8
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.6e-172 608.6 415 74.5
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.0e-171 607.1 414 73.2
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.0e-171 607.1 419 73.0
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.4e-171 606.7 414 72.7
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.4e-171 606.7 415 74.0
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 3.0e-171 605.5 415 73.0
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 6.7e-171 604.4 415 73.3
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.1e-170 603.6 415 73.5
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.5e-170 603.2 416 72.8
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.5e-170 602.4 416 72.8
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 7.4e-170 600.9 414 73.2
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.3e-169 600.1 412 72.6
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.8e-169 599.0 415 72.5
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.8e-169 598.2 415 72.3
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.3e-169 597.8 415 72.3
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 8.2e-169 597.4 415 72.5
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.4e-168 595.9 415 72.3
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.5e-167 593.2 480 65.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.3e-166 590.1 378 77.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.2e-166 589.3 415 71.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.9e-166 589.0 413 72.2
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 5.0e-166 588.2 419 70.9
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.9e-165 586.3 414 70.0
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 1.6e-164 583.2 510 62.0
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.7e-164 582.4 418 70.6
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 7.9e-164 580.9 411 71.0
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.0e-163 578.9 414 69.1
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 9.7e-162 573.9 421 71.0
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 3.1e-160 568.9 467 64.2
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 5.2e-155 551.6 419 66.3
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.3e-150 537.0 431 64.3
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 5.5e-149 531.6 351 75.5
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 5.5e-149 531.6 411 65.5
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 4.5e-143 511.9 411 62.0
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.7e-142 510.0 307 81.1
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 8.8e-139 497.7 412 60.0
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.0e-134 484.2 331 73.1
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.3e-133 479.2 334 72.8
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 8.0e-132 474.6 411 59.6
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.3e-131 473.0 351 69.8
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.3e-131 473.0 418 60.0
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 7.0e-128 461.5 419 58.5
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.3e-125 452.6 343 67.9
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 9.5e-125 451.1 419 57.0
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.3e-109 399.4 235 82.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 3.6e-100 369.4 244 74.6
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 4.5e-82 309.3 433 43.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.1e-76 290.4 182 79.7
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 1.0e-73 281.6 393 44.5
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.2e-71 274.6 246 60.6
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.5e-64 250.4 333 45.0
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.2e-56 223.4 188 64.9
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 9.4e-48 195.3 115 83.5
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 2.8e-44 183.7 242 47.1
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 2.2e-36 157.5 153 52.9
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.1e-35 155.2 220 43.6
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 5.2e-30 136.3 103 66.0
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 2.8e-28 130.6 81 77.8
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 2.9e-25 120.6 83 67.5
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 9.5e-24 115.5 184 44.0
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.1e-23 114.4 90 62.2
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 5.2e-22 109.8 74 67.6
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 5.2e-22 109.8 74 67.6
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 8.8e-22 109.0 91 61.5
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 8.8e-22 109.0 91 61.5
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 3.4e-21 107.1 74 66.2
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.4e-21 107.1 84 63.1
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 4.9e-20 103.2 91 60.4
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.0e-17 95.5 73 63.0
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 3.3e-16 90.5 66 62.1
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 4.3e-16 90.1 82 57.3
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 8.9e-14 82.4 59 67.8
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.5e-13 81.6 65 56.9
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 7.0e-11 72.8 86 51.2
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 2.7e-10 70.9 115 40.9
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 3.5e-10 70.5 115 40.0
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 4.0e-06 57.0 125 33.6


User provided reference genes

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