Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 2552.7 1290 100.0
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 2420.6 1290 94.7
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 2262.6 1289 88.6
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 2215.7 1289 86.7
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 2140.5 1293 84.2
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 2131.7 1290 82.9
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 2130.5 1292 83.2
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 2128.2 1288 83.2
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 2125.9 1291 83.6
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 2089.3 1292 81.9
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 2042.7 1313 80.0
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 2039.2 1297 80.6
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1898.2 1289 75.7
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1724.5 1297 68.0
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1711.0 1296 68.4
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1704.1 1303 66.5
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1694.1 1300 66.5
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1664.4 1298 64.0
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1664.0 1296 65.7
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1662.5 1295 66.2
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1651.3 1304 65.5
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1649.8 1293 65.7
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1633.6 1298 65.6
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1631.3 1322 64.1
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1629.4 1300 64.6
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1610.1 1293 65.0
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1608.2 1297 64.1
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1605.5 1313 63.7
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1605.5 1277 64.8
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1604.0 1292 64.5
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1602.0 1297 63.4
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1601.6 1308 63.9
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1601.3 1293 64.4
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1590.9 1241 66.6
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1588.5 1299 63.9
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1585.5 1313 63.1
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1583.5 1388 60.2
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1581.2 1333 62.0
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1576.2 1298 62.3
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1576.2 1419 60.0
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1573.9 1266 64.1
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1554.3 1297 62.0
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1540.4 1361 59.7
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1539.6 1189 66.6
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1535.8 1298 61.2
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1531.9 1294 61.4
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1528.5 1302 61.1
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1526.1 1293 60.9
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1521.5 1301 60.6
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1511.5 1303 58.9
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1499.2 1114 69.2
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1498.8 1299 58.9
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1496.5 1291 60.0
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1483.0 1289 59.6
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1479.2 1301 59.6
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1475.7 1311 59.2
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1471.1 1317 59.1
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1468.4 1111 67.8
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1457.6 1302 59.1
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1456.0 1291 57.2
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1450.6 1293 58.5
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1449.9 1295 57.5
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1446.4 1364 56.2
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1444.5 1299 57.7
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1440.6 1297 56.9
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1440.2 1296 57.2
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1440.2 1298 57.0
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1433.3 1299 57.2
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1429.8 1299 57.0
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1426.4 1290 58.1
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1424.8 1295 57.4
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1423.7 1296 56.4
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1421.0 1296 55.5
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1416.4 1294 56.5
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1415.2 1294 56.5
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1411.0 1294 56.3
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1405.6 1108 65.7
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1404.8 1307 57.4
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1404.4 1316 55.2
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1403.3 1316 57.4
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1392.9 1316 55.4
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1381.7 1393 54.8
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1377.1 1291 56.7
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1362.4 1292 55.1
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1358.2 1081 63.7
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1358.2 1120 64.2
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1343.2 1159 62.1
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1340.9 1157 59.6
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1338.9 1110 61.6
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1338.6 1304 52.1
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1335.5 1309 53.6
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1332.0 1280 54.5
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1305.4 1077 61.7
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1303.1 1293 53.5
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1282.7 1283 52.8
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1273.1 1210 56.0
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1266.9 1304 50.3
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1235.7 1298 49.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1230.7 1329 50.9
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1206.8 1286 50.1
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1181.0 1301 50.0
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1126.3 1405 46.1
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.7e-276 956.8 924 53.2
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 8.0e-263 911.4 1346 39.7
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 6.3e-260 901.7 848 55.3
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 5.4e-259 898.7 1370 39.7
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.5e-256 887.9 745 60.7
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.2e-255 887.5 651 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 7.5e-245 851.7 1180 41.4
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.6e-199 701.0 941 42.7
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 3.5e-194 683.3 1291 34.7
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 7.4e-176 622.5 568 56.2
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 5.9e-157 559.7 661 45.8
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 8.3e-151 539.3 351 78.9
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.4e-145 521.9 382 71.7
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 2.4e-134 484.6 507 57.0
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 1.5e-131 475.3 461 55.3
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 4.1e-126 457.2 323 67.5
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 1.2e-104 386.0 222 79.3
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 1.2e-96 359.4 1084 26.0
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.9e-91 342.0 418 45.7
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-88 332.8 473 41.2
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.0e-80 305.4 215 70.2
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 7.6e-80 303.5 210 71.0
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 3.3e-75 288.1 215 67.4
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 9.0e-73 280.0 869 25.5
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 6.1e-69 267.3 290 49.3
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.3e-68 265.4 158 77.2
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 8.5e-63 246.9 153 73.2
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.5e-59 236.1 189 57.1
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.3e-55 223.0 735 26.0
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 5.9e-48 197.6 981 22.8
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 6.5e-47 194.1 167 58.7
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 4.4e-43 181.4 217 41.5
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.3e-36 159.1 207 42.5
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 2.8e-34 152.1 153 56.2
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.4e-33 149.1 144 56.9
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 2.0e-32 146.0 179 45.3
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 5.9e-32 144.4 149 53.7
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.0e-31 143.7 116 75.0
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 6.5e-31 141.0 122 59.8
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.9e-30 139.4 113 63.7
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.2e-30 138.7 123 52.8
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-29 136.7 101 60.4
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 8.0e-29 134.0 113 74.3
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 4.0e-28 131.7 386 28.8
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 4.3e-22 111.7 72 73.6
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-20 106.7 86 62.8
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.2e-20 104.8 210 33.3
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 9.8e-19 100.5 57 82.5
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 8.3e-18 97.4 85 54.1
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 8.3e-18 97.4 224 33.5
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 1.7e-15 89.7 85 58.8
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 8.6e-15 87.4 65 58.5
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 2.1e-13 82.8 60 68.3
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 6.8e-12 77.8 87 48.3
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.3e-10 73.6 41 82.9
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.7e-10 72.0 204 31.4
VMungo0464G0148 Vigna mungo HOM05D002644 ORTHO05D003267 2.4e-09 69.3 34 88.2
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 1.2e-08 67.0 81 48.1
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.7e-08 65.9 73 65.8
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 1.7e-07 63.2 81 61.7
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 3.0e-07 62.4 45 66.7


User provided reference genes

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