Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 7.4e-39 163.7 101 100.0
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 2.2e-11 72.4 42 76.2
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.6e-09 66.2 42 66.7
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 4.7e-09 64.7 44 65.9
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 4.7e-09 64.7 42 64.3
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 8.0e-09 63.9 57 52.6
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 8.0e-09 63.9 57 52.6
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 8.0e-09 63.9 34 73.5
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.0e-08 63.5 34 73.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.0e-08 63.5 42 64.3
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.0e-08 63.5 35 71.4
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.3e-08 62.4 42 61.9
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.3e-08 62.4 47 57.4
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 4.0e-08 61.6 42 64.3
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 4.0e-08 61.6 42 59.5
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 5.2e-08 61.2 34 70.6
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 6.7e-08 60.8 42 64.3
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 8.8e-08 60.5 42 59.5
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 8.8e-08 60.5 54 50.0
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 8.8e-08 60.5 34 70.6
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.5e-07 59.7 46 52.2
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.5e-07 59.7 42 64.3
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.5e-07 59.7 42 64.3
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.5e-07 59.7 42 57.1
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.0e-07 59.3 35 62.9
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.6e-07 58.9 50 52.0
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.6e-07 58.9 42 59.5
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.3e-07 58.5 47 48.9
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 3.3e-07 58.5 42 59.5
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 3.3e-07 58.5 42 59.5
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.3e-07 58.5 35 68.6
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.3e-07 58.5 42 57.1
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 3.3e-07 58.5 34 61.8
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 3.3e-07 58.5 42 59.5
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 4.4e-07 58.2 47 48.9
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 5.7e-07 57.8 50 48.0
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 5.7e-07 57.8 42 59.5
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 7.5e-07 57.4 44 65.9
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 9.7e-07 57.0 42 59.5
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.3e-06 56.6 30 66.7
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.7e-06 56.2 42 54.8
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.7e-06 56.2 50 52.0
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 2.2e-06 55.8 42 59.5
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 2.2e-06 55.8 35 65.7
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.8e-06 55.5 42 54.8
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.8e-06 55.5 35 57.1
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 2.8e-06 55.5 32 62.5
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 3.7e-06 55.1 42 52.4
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 4.8e-06 54.7 47 55.3
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.8e-06 54.7 42 52.4
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 4.8e-06 54.7 42 52.4
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 6.3e-06 54.3 34 58.8
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 6.3e-06 54.3 44 54.5
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.3e-06 54.3 34 61.8
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 6.3e-06 54.3 36 63.9
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 8.2e-06 53.9 34 61.8
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 8.2e-06 53.9 43 58.1


User provided reference genes

Program Settings