Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 4.2e-36 154.1 73 100.0
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.8e-31 138.7 72 88.9
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.4e-23 112.5 68 76.5
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 8.6e-21 103.2 66 77.3
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.0e-18 94.7 68 64.7
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 8.9e-18 93.2 69 65.2
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.6e-17 91.7 62 66.1
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.7e-16 89.0 69 62.3
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.2e-16 88.6 62 66.1
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.0e-14 82.0 68 52.9
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 4.6e-14 80.9 60 55.0
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 4.6e-14 80.9 60 55.0
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 4.6e-14 80.9 60 55.0
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 4.6e-14 80.9 60 55.0
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 4.6e-14 80.9 66 53.0
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 4.6e-14 80.9 66 53.0
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 5.9e-14 80.5 60 55.0
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 5.9e-14 80.5 60 55.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 7.8e-14 80.1 65 58.5
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.3e-13 79.3 65 58.5
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.3e-13 79.3 60 53.3
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 5.0e-13 77.4 46 71.7
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 6.6e-13 77.0 66 50.0
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 6.6e-13 77.0 66 54.5
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.1e-12 76.3 60 51.7
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.1e-12 76.3 60 51.7
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.1e-12 76.3 60 51.7
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.5e-12 75.9 60 51.7
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.5e-12 75.9 60 51.7
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.5e-12 75.9 59 52.5
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.9e-12 75.5 63 50.8
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.9e-12 75.5 65 47.7
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.5e-12 75.1 68 48.5
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 3.3e-12 74.7 66 51.5
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 3.3e-12 74.7 62 50.0
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.3e-12 74.7 58 53.4
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 4.3e-12 74.3 66 53.0
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 5.6e-12 73.9 73 47.9
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 5.6e-12 73.9 58 51.7
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 5.6e-12 73.9 61 49.2
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.6e-12 73.9 58 53.4
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 7.3e-12 73.6 63 47.6
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 7.3e-12 73.6 58 51.7
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 7.3e-12 73.6 64 50.0
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 9.5e-12 73.2 62 50.0
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.5e-12 73.2 58 51.7
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.2e-11 72.8 60 50.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.6e-11 72.4 66 51.5
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.6e-11 72.4 66 51.5
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.6e-11 72.4 62 51.6
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.6e-11 72.4 57 52.6
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.6e-11 72.4 63 46.0
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 2.8e-11 71.6 69 49.3
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.6e-11 71.2 66 50.0
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 4.7e-11 70.9 58 51.7
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 4.7e-11 70.9 59 47.5
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 8.0e-11 70.1 60 50.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 8.0e-11 70.1 63 44.4
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.0e-10 69.7 63 49.2
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.0e-10 69.7 58 48.3
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.4e-10 69.3 62 50.0
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 1.4e-10 69.3 53 50.9
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.8e-10 68.9 60 48.3
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.8e-10 68.9 69 47.8
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.3e-10 68.6 63 47.6
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 2.3e-10 68.6 65 43.1
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.1e-10 68.2 59 45.8
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.1e-10 68.2 59 45.8
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 3.1e-10 68.2 59 49.2
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 4.0e-10 67.8 55 54.5
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.0e-10 67.8 55 54.5
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 4.0e-10 67.8 59 45.8
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 5.2e-10 67.4 57 54.4
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 5.2e-10 67.4 59 45.8
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 6.8e-10 67.0 55 49.1
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 8.9e-10 66.6 63 42.9
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.2e-09 66.2 63 41.3
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.2e-09 66.2 58 48.3
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.5e-09 65.9 59 45.8
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.5e-09 65.9 59 45.8
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 1.5e-09 65.9 55 50.9
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 1.5e-09 65.9 55 50.9
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.5e-09 65.9 57 49.1
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.0e-09 65.5 58 46.6
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 2.0e-09 65.5 58 44.8
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 2.6e-09 65.1 65 43.1
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 2.6e-09 65.1 65 43.1
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.4e-09 64.7 68 47.1
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 4.4e-09 64.3 58 43.1
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 5.8e-09 63.9 70 44.3
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 7.5e-09 63.5 63 42.9
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.3e-08 62.8 59 40.7
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.3e-08 62.8 59 40.7
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 2.2e-08 62.0 68 45.6
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.1e-07 59.7 59 44.1
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.1e-07 59.7 69 40.6
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.1e-07 59.7 69 40.6
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.1e-07 59.7 69 40.6
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.1e-07 59.7 47 51.1
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.1e-07 59.7 52 53.8
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.4e-07 59.3 66 47.0
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.9e-07 58.9 45 53.3
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 9.2e-07 56.6 43 51.2
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.0e-06 55.5 61 47.5
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.7e-06 55.1 56 42.9
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 6.0e-06 53.9 63 34.9
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 7.8e-06 53.5 53 45.3


User provided reference genes

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