Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 0.0e+00 1184.9 601 100.0
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 4.1e-294 1014.2 601 86.9
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 9.8e-264 913.3 584 82.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 5.4e-246 854.4 559 79.6
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.4e-230 803.1 597 70.9
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-229 799.3 626 70.9
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 8.7e-228 793.9 605 72.4
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 6.2e-226 787.7 579 73.2
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 5.8e-224 781.2 578 73.2
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.9e-223 778.1 578 72.7
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.9e-222 776.2 614 69.2
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 5.4e-222 774.6 613 69.0
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 3.1e-217 758.8 580 70.7
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 2.0e-216 756.1 580 71.4
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 2.3e-212 742.7 583 70.2
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.3e-210 736.9 584 68.5
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.6e-210 736.5 599 66.1
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 3.7e-210 735.3 576 68.6
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 6.2e-210 734.6 592 68.8
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 3.4e-208 728.8 575 68.2
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.0e-207 727.2 631 65.9
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.7e-207 726.5 588 66.8
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 3.8e-207 725.3 576 66.8
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 3.8e-207 725.3 597 67.7
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.1e-206 723.8 594 66.8
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.2e-206 722.2 600 65.0
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 3.2e-206 722.2 595 66.1
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.2e-206 721.8 597 65.3
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.2e-206 721.8 600 65.0
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 7.9e-205 717.6 600 65.2
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.3e-204 716.1 600 65.2
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 6.7e-204 714.5 585 66.0
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.1e-201 705.7 593 64.4
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 2.6e-200 702.6 589 64.9
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.0e-199 700.7 584 64.4
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.9e-199 699.1 613 62.3
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 3.8e-199 698.7 594 64.5
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 5.0e-199 698.4 587 63.7
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.4e-198 696.8 588 63.1
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.9e-198 696.4 595 63.4
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 4.2e-198 695.3 587 64.4
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 5.5e-198 694.9 604 62.9
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 2.1e-197 693.0 598 64.9
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.0e-196 690.6 588 64.3
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.8e-196 689.9 593 63.2
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 2.3e-196 689.5 589 65.4
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 3.3e-195 685.6 577 65.0
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 5.7e-195 684.9 581 63.0
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 9.7e-195 684.1 593 61.9
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.3e-194 683.7 595 61.7
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 3.7e-194 682.2 604 62.3
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 8.2e-194 681.0 594 60.9
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 8.2e-194 681.0 594 61.8
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.4e-193 680.2 594 61.1
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 3.1e-193 679.1 593 64.2
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.9e-193 677.9 626 59.3
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 9.1e-193 677.6 601 62.4
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.5e-192 676.8 598 62.0
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.6e-192 676.0 603 60.7
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 2.2e-191 672.9 584 62.3
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.8e-191 672.2 530 68.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 5.0e-191 671.8 592 62.7
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.0e-191 671.8 595 61.5
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.9e-190 669.8 592 61.1
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 2.5e-190 669.5 596 62.4
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.1e-189 666.4 488 70.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.7e-189 666.0 587 61.0
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 3.6e-189 665.6 603 59.9
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 4.6e-189 665.2 600 61.0
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 7.9e-189 664.5 586 61.6
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 8.8e-188 661.0 585 62.4
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 2.0e-187 659.8 614 60.4
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.0e-187 659.8 574 62.4
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.6e-187 659.4 600 61.8
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.4e-187 658.7 608 59.7
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 7.4e-187 657.9 597 60.6
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.7e-186 656.8 609 58.6
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 3.7e-186 655.6 556 64.6
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.2e-186 654.4 621 58.6
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 5.3e-185 651.7 590 61.4
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 9.1e-185 651.0 595 59.8
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 4.5e-184 648.7 536 64.4
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 2.9e-183 646.0 601 59.1
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 3.8e-183 645.6 602 60.0
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 6.5e-183 644.8 593 59.9
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.5e-182 642.9 543 65.6
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 4.2e-182 642.1 593 59.4
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 5.5e-182 641.7 598 59.9
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 9.4e-182 641.0 666 56.6
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 6.1e-181 638.3 585 59.7
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 6.1e-181 638.3 576 60.6
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 7.9e-181 637.9 591 60.4
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 5.2e-180 635.2 600 59.3
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 8.8e-180 634.4 598 59.2
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.1e-179 634.0 623 57.0
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.0e-179 633.3 591 59.7
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 2.6e-179 632.9 595 58.5
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.6e-179 632.9 600 59.0
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 3.3e-179 632.5 591 58.7
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 3.3e-179 632.5 578 60.0
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 5.7e-179 631.7 640 55.3
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 9.7e-179 630.9 585 59.8
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.3e-178 630.6 603 58.2
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-178 630.6 602 58.3
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 6.3e-178 628.2 589 58.2
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.4e-177 627.1 617 56.4
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 5.3e-177 625.2 595 58.0
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 1.6e-176 623.6 667 53.1
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.0e-176 623.2 597 59.0
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.5e-176 622.5 590 58.8
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 2.2e-175 619.8 644 54.0
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 3.8e-175 619.0 509 65.8
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.5e-174 616.3 597 58.5
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 2.1e-173 613.2 591 57.0
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 2.1e-173 613.2 591 57.2
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.0e-172 609.0 625 55.5
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 5.2e-172 608.6 593 58.2
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 9.1e-169 597.8 594 56.1
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.6e-168 597.0 585 56.4
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 5.0e-167 592.0 585 55.7
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.1e-166 590.9 565 57.9
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 9.4e-166 587.8 584 55.8
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.3e-164 583.2 558 57.7
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.2e-162 576.6 570 56.8
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.0e-161 571.6 486 65.2
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.2e-160 570.9 562 56.2
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 6.5e-159 565.1 579 56.0
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.5e-155 553.9 558 55.7
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 5.7e-155 552.0 536 57.8
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.7e-154 549.3 481 60.3
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.4e-153 547.4 578 55.0
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.4e-153 546.6 561 55.4
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 7.0e-153 545.0 597 53.4
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.7e-146 523.9 636 49.2
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 6.4e-146 521.9 473 60.9
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.1e-145 521.2 560 52.1
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.6e-141 507.3 559 52.4
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 2.1e-141 506.9 449 59.7
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 3.4e-139 499.6 585 50.4
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 5.0e-135 485.7 599 48.2
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 8.1e-133 478.4 440 59.1
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.4e-129 466.8 338 70.4
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 6.0e-128 462.2 380 64.7
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 7.3e-110 402.1 393 55.2
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 4.8e-109 399.4 315 67.0
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.7e-103 379.0 338 61.8
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 4.8e-101 372.9 631 37.2
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 7.1e-89 332.4 367 52.0
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.7e-72 277.3 273 60.4
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.0e-70 271.2 237 65.4
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.6e-64 251.5 163 78.5
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.9e-49 201.4 246 52.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 2.0e-43 181.4 138 72.5
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 3.8e-34 150.6 362 31.2
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.8e-32 144.4 545 24.8
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 2.3e-31 141.4 560 24.5
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 4.4e-30 137.1 167 52.7
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.4e-28 132.1 88 72.7
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 3.4e-22 110.9 94 57.4
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 7.5e-22 109.8 79 64.6
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 2.9e-21 107.8 75 65.3
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 2.5e-17 94.7 66 80.3
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.2e-16 92.4 100 53.0
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 6.2e-16 90.1 72 61.1
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 8.1e-16 89.7 83 59.0
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.5e-14 85.5 62 66.1
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.4e-12 79.0 195 32.8
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 1.6e-11 75.5 103 43.7
Glyma.20G064301 Glycine max HOM05D004045 ORTHO05D213272 3.3e-09 67.8 33 100.0
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 1.1e-07 62.8 266 30.1
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 8.9e-07 59.7 36 80.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.6e-06 58.2 35 80.0
RhsimUnG0001000 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.4e-06 57.8 34 70.6
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 4.4e-06 57.4 38 81.6


User provided reference genes

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