Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.2e-48 196.1 94 100.0
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 6.6e-42 173.7 94 87.2
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 8.1e-40 166.8 98 83.7
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 5.3e-39 164.1 94 80.9
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 9.0e-39 163.3 94 80.9
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.2e-38 162.9 94 81.9
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.2e-37 158.7 93 76.3
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 8.4e-37 156.8 93 79.6
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 2.4e-36 155.2 94 75.5
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 2.4e-36 155.2 93 76.3
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 5.4e-36 154.1 92 76.1
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.6e-35 152.5 93 75.3
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 3.5e-35 151.4 94 76.6
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 1.0e-34 149.8 93 73.1
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 3.0e-34 148.3 93 74.2
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 3.0e-34 148.3 92 73.9
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 3.9e-34 147.9 93 69.9
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 6.7e-34 147.1 93 73.1
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 8.7e-34 146.7 89 76.4
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 1.1e-33 146.4 93 72.0
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.5e-33 146.0 93 72.0
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.5e-33 146.0 90 72.2
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 2.5e-33 145.2 93 73.1
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 2.5e-33 145.2 92 72.8
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.3e-33 144.8 93 71.0
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 3.3e-33 144.8 94 73.4
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 7.4e-33 143.7 93 72.0
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 9.6e-33 143.3 93 73.1
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 9.6e-33 143.3 93 73.1
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 9.6e-33 143.3 94 71.3
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 1.3e-32 142.9 89 75.3
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 1.3e-32 142.9 89 75.3
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 1.3e-32 142.9 89 75.3
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.1e-32 142.1 93 69.9
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.1e-32 142.1 93 69.9
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 2.8e-32 141.7 93 69.9
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.8e-32 141.7 93 73.1
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 3.7e-32 141.4 93 71.0
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.8e-32 141.0 93 69.9
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 4.8e-32 141.0 93 69.9
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 8.1e-32 140.2 91 71.4
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.1e-31 139.8 94 70.2
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.1e-31 139.8 92 68.5
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 1.4e-31 139.4 94 70.2
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 5.3e-31 137.5 95 69.5
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 5.3e-31 137.5 94 69.1
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 5.3e-31 137.5 94 69.1
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 6.9e-31 137.1 92 68.5
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 6.9e-31 137.1 133 55.6
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 1.2e-30 136.3 93 69.9
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 2.0e-30 135.6 92 68.5
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 4.5e-30 134.4 105 64.8
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 7.6e-30 133.7 87 67.8
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 2.2e-29 132.1 93 69.9
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 2.2e-29 132.1 93 67.7
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 2.2e-29 132.1 93 66.7
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 2.2e-29 132.1 93 68.8
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.9e-29 131.7 94 67.0
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 3.8e-29 131.3 92 70.7
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 3.8e-29 131.3 93 68.8
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 1.1e-28 129.8 93 66.7
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.9e-28 129.0 95 63.2
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 4.2e-28 127.9 87 70.1
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 5.5e-28 127.5 93 66.7
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 7.1e-28 127.1 93 65.6
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 7.1e-28 127.1 93 65.6
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 7.1e-28 127.1 93 65.6
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 7.1e-28 127.1 93 65.6
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 7.1e-28 127.1 93 65.6
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.6e-27 125.9 93 65.6
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 2.1e-27 125.6 91 65.9
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 4.6e-27 124.4 93 65.6
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 1.0e-26 123.2 93 64.5
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.3e-26 122.1 87 63.2
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.3e-26 122.1 94 62.8
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 3.0e-26 121.7 94 62.8
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 3.0e-26 121.7 142 45.8
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 8.7e-26 120.2 93 61.3
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.9e-25 119.0 84 65.5
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 7.4e-25 117.1 75 72.0
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 7.4e-25 117.1 94 61.7
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 3.7e-24 114.8 90 64.4
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.2e-24 114.0 71 76.1
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 8.2e-24 113.6 70 77.1
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 3.1e-23 111.7 70 75.7
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 1.2e-22 109.8 92 63.0
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 2.0e-22 109.0 164 40.2
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 7.6e-22 107.1 95 60.0
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 2.2e-21 105.5 91 59.3
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 1.1e-20 103.2 65 72.3
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 4.2e-20 101.3 93 57.0
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 3.5e-19 98.2 94 58.5
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 7.9e-19 97.1 65 70.8
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.8e-18 95.9 62 66.1
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 3.0e-18 95.1 64 68.8
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 8.7e-18 93.6 60 75.0
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 6.3e-16 87.4 50 76.0
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 2.0e-14 82.4 70 55.7
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 3.4e-14 81.6 67 61.2
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 3.4e-14 81.6 49 77.6
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 8.5e-13 77.0 54 66.7
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 2.5e-12 75.5 49 65.3
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 1.5e-09 66.2 45 64.4
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 2.5e-09 65.5 46 67.4
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 1.7e-08 62.8 59 55.9
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 2.8e-08 62.0 58 53.4
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 7.7e-06 53.9 28 82.1


User provided reference genes

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