Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.0e-80 302.4 149 100.0
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 4.6e-53 211.5 261 49.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 4.9e-47 191.4 269 46.1
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 9.2e-46 187.2 267 44.6
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 2.3e-44 182.6 267 44.6
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 5.0e-44 181.4 256 46.5
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 6.6e-44 181.0 245 46.1
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.6e-42 176.4 270 44.1
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.4e-38 163.3 85 92.9
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.9e-38 162.9 208 47.6
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 3.2e-38 162.2 254 42.9
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 7.1e-38 161.0 254 42.5
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.1e-37 159.5 255 42.0
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 4.6e-37 158.3 257 40.9
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.1e-35 153.7 172 48.8
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.6e-34 148.7 85 84.7
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.4e-32 142.1 274 38.3
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 2.4e-30 136.0 172 45.3
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.4e-30 136.0 230 40.0
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.2e-30 135.6 208 42.8
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.6e-28 127.9 264 34.1
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.1e-27 127.1 264 33.7
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.5e-27 126.7 251 34.3
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.3e-27 125.2 251 33.9
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 1.6e-26 123.2 255 34.5
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.8e-26 122.5 255 35.7
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 6.2e-26 121.3 251 34.7
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.1e-25 120.6 262 33.2
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.1e-25 120.6 255 34.1
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.1e-25 120.6 256 34.0
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.4e-25 120.2 264 33.7
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 1.4e-25 120.2 255 33.7
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.8e-25 119.8 260 34.2
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.4e-25 119.4 256 32.4
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 4.0e-25 118.6 265 33.6
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 9.0e-25 117.5 259 35.1
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.2e-24 117.1 267 33.3
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.2e-24 117.1 255 34.9
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.2e-24 117.1 261 32.2
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.2e-24 117.1 237 34.2
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.2e-24 117.1 250 34.4
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.6e-24 115.9 262 31.3
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.6e-24 115.9 255 34.5
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.6e-24 115.9 255 33.3
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 4.4e-24 115.2 265 32.5
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 7.6e-24 114.4 257 31.9
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 1.3e-23 113.6 245 33.1
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.7e-23 113.2 246 33.7
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 2.9e-23 112.5 257 32.3
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 3.8e-23 112.1 255 33.7
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 6.4e-23 111.3 256 34.0
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.4e-22 110.2 251 31.5
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 3.2e-22 109.0 270 32.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.1e-22 107.8 255 32.2
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.1e-21 106.3 213 36.2
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 2.7e-21 105.9 253 32.0
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 4.6e-21 105.1 273 31.5
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 6.0e-21 104.8 256 30.9
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 7.8e-21 104.4 250 31.6
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.7e-20 103.2 254 30.7
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.9e-20 102.1 265 30.2
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 5.1e-20 101.7 265 29.8
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.6e-20 101.3 256 30.9
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.1e-19 100.5 258 31.0
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.9e-19 99.8 171 39.2
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 2.5e-19 99.4 254 31.1
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 3.3e-19 99.0 265 29.8
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.3e-19 99.0 265 30.2
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.3e-19 98.6 262 30.5
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 4.3e-19 98.6 267 29.6
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.6e-19 98.2 64 73.4
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 7.3e-19 97.8 266 29.3
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 7.3e-19 97.8 264 29.2
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 9.6e-19 97.4 243 30.5
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.3e-18 97.1 254 29.5
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.3e-18 97.1 254 29.1
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.3e-18 97.1 64 75.0
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 2.8e-18 95.9 64 70.3
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.6e-18 95.5 256 30.1
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 4.8e-18 95.1 64 73.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.2e-18 94.7 243 30.0
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 6.2e-18 94.7 251 29.9
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 6.2e-18 94.7 248 31.5
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.4e-17 92.8 64 71.9
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.0e-17 92.0 64 68.8
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 5.3e-17 91.7 246 30.5
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.2e-16 90.5 205 28.3
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.5e-16 90.1 209 31.1
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 1.5e-16 90.1 73 60.3
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.0e-16 89.7 248 27.0
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.6e-16 89.4 250 29.2
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 7.6e-16 87.8 86 48.8
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.3e-15 87.0 63 65.1
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.3e-15 87.0 260 28.5
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.3e-15 87.0 264 28.4
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.7e-15 86.7 185 34.1
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.7e-15 86.7 64 64.1
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 2.2e-15 86.3 277 26.7
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 2.2e-15 86.3 268 28.7
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.2e-15 86.3 64 67.2
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.8e-15 85.5 64 64.1
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.8e-15 85.5 72 55.6
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 4.9e-15 85.1 252 28.6
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 6.4e-15 84.7 77 62.3
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.1e-14 84.0 285 26.7
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.2e-14 82.4 77 55.8
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 7.1e-14 81.3 266 27.1
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 9.3e-14 80.9 274 25.9
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-13 80.5 250 28.4
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.2e-13 80.5 250 28.4
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.2e-13 80.5 250 28.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.2e-13 80.5 262 27.5
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 2.1e-13 79.7 85 55.3
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.1e-13 79.7 77 51.9
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.7e-13 79.3 63 60.3
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.7e-13 79.3 56 67.9
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.5e-13 79.0 258 27.5
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 3.5e-13 79.0 84 51.2
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 4.6e-13 78.6 253 27.3
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 6.0e-13 78.2 250 28.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.9e-13 77.8 256 27.0
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 7.9e-13 77.8 137 36.5
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.0e-12 77.4 250 27.2
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.3e-12 76.3 259 25.1
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 3.0e-12 75.9 254 27.2
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.1e-12 75.1 237 26.6
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 6.7e-12 74.7 251 26.7
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 8.7e-12 74.3 229 26.6
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 3.3e-11 72.4 235 26.0
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 3.3e-11 72.4 56 64.3
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 3.3e-11 72.4 218 25.7
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.6e-11 71.6 83 49.4
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 7.4e-11 71.2 245 27.3
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 7.4e-11 71.2 77 54.5
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-10 70.5 236 26.7
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.1e-10 69.7 75 50.7
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 2.8e-10 69.3 84 51.2
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 2.8e-10 69.3 72 50.0
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 3.7e-10 68.9 84 50.0
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 4.8e-10 68.6 64 48.4
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 6.2e-10 68.2 72 48.6
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 8.1e-10 67.8 80 52.5
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 8.1e-10 67.8 80 52.5
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.1e-09 67.4 64 50.0
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.8e-09 66.6 128 30.5
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.8e-09 66.6 263 26.2
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.8e-09 66.6 90 44.4
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.4e-09 66.2 84 47.6
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.9e-09 64.7 220 25.9
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 9.0e-09 64.3 85 43.5
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-08 63.9 64 48.4
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.2e-08 63.9 233 24.9
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.6e-08 62.8 40 67.5
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.4e-08 62.4 64 46.9
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 3.4e-08 62.4 43 65.1
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.7e-07 60.1 66 45.5
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.8e-07 58.9 64 46.9
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 4.9e-07 58.5 75 48.0
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 4.9e-07 58.5 75 48.0
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.4e-07 57.8 63 49.2
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.1e-06 57.4 75 46.7
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.1e-06 57.4 75 46.7
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.1e-06 57.4 50 52.0
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.4e-06 57.0 75 48.0
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.4e-06 56.2 40 60.0
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 4.2e-06 55.5 96 38.5
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.2e-06 55.5 76 46.1


User provided reference genes

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