Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 0.0e+00 1094.7 554 100.0
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 4.4e-101 372.9 647 41.4
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 4.9e-100 369.4 614 41.5
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 2.4e-99 367.1 588 43.0
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 1.3e-92 344.7 609 40.6
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 8.3e-92 342.0 603 40.1
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 1.0e-89 335.1 606 40.1
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 1.1e-83 315.1 583 37.6
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 7.3e-80 302.4 588 36.9
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 1.3e-76 291.6 565 38.6
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 1.9e-67 261.2 600 33.5
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.7e-65 254.6 591 34.0
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 5.1e-65 253.1 529 36.5
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 5.1e-49 199.9 587 31.9
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 9.6e-48 195.7 610 30.3
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.1e-46 192.2 636 29.9
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 6.5e-44 183.0 621 27.9
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 2.5e-40 171.0 195 46.2
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.3e-39 168.7 195 45.6
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.1e-39 167.9 615 27.8
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 6.2e-39 166.4 564 27.8
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.1e-38 165.6 611 27.8
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 2.4e-38 164.5 635 28.7
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 1.1e-35 155.6 595 28.9
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 8.2e-31 139.4 581 26.7
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 4.2e-27 127.1 555 26.3
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 4.2e-27 127.1 575 25.7
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.8e-25 121.7 563 25.4
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 5.7e-24 116.7 158 38.0
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 5.7e-24 116.7 158 38.0
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 4.8e-23 113.6 158 37.3
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 2.4e-22 111.3 158 36.7
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.1e-22 110.9 207 33.3
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 5.3e-22 110.2 179 34.1
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 3.8e-20 104.0 517 26.3
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.1e-19 102.4 135 40.0
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.4e-19 102.1 481 23.3
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.9e-19 101.7 143 39.2
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 4.2e-19 100.5 550 25.3
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 4.2e-19 100.5 105 46.7
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 7.2e-19 99.8 192 34.9
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 4.7e-18 97.1 149 35.6
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 4.7e-18 97.1 144 36.8
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.0e-17 95.9 140 35.7
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 1.8e-17 95.1 142 36.6
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 2.3e-17 94.7 143 36.4
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.9e-17 94.0 588 22.8
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 5.1e-17 93.6 531 26.9
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.1e-17 93.6 588 23.1
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 6.7e-17 93.2 163 32.5
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 1.1e-16 92.4 408 26.0
Glyma.16G046651 Glycine max HOM05D007742 ORTHO05D004072 1.5e-16 92.0 105 50.5
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.0e-16 91.7 157 34.4
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.3e-16 90.9 184 29.9
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 4.4e-16 90.5 175 31.4
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 4.4e-16 90.5 150 35.3
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 9.7e-16 89.4 207 30.4
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 1.3e-15 89.0 476 27.1
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 2.8e-15 87.8 183 33.3
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 3.7e-15 87.4 125 38.4
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 3.7e-15 87.4 581 25.1
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 4.8e-15 87.0 143 35.7
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 4.8e-15 87.0 163 30.7
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 8.2e-15 86.3 140 35.7
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 8.2e-15 86.3 146 37.7
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.1e-14 85.9 140 35.7
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.1e-14 85.9 140 35.7
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.8e-14 85.1 140 35.7
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.8e-14 85.1 127 35.4
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.8e-14 85.1 127 35.4
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 2.4e-14 84.7 534 25.5
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 4.1e-14 84.0 133 39.1
Glyma.16G046800 Glycine max HOM05D007742 ORTHO05D004072 4.1e-14 84.0 105 44.8
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 4.1e-14 84.0 120 38.3
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 4.1e-14 84.0 588 24.0
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 4.1e-14 84.0 135 33.3
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 5.3e-14 83.6 140 35.7
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 5.3e-14 83.6 151 33.8
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.2e-13 82.4 153 33.3
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.0e-13 81.6 154 33.1
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.5e-13 80.9 154 33.1
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 7.7e-13 79.7 186 29.6
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 1.0e-12 79.3 154 33.8
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.3e-12 79.0 151 31.8
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.3e-12 79.0 162 31.5
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.3e-12 79.0 211 29.4
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.7e-12 78.6 150 32.7
Lj7A618T68 Lonicera japonica HOM05D007742 ORTHO05D004072 1.7e-12 78.6 216 32.9
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 2.9e-12 77.8 117 37.6
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.9e-12 77.8 164 28.7
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 3.8e-12 77.4 163 31.9
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 6.5e-12 76.6 658 21.6
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 8.5e-12 76.3 106 38.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.5e-11 75.5 173 30.1
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.9e-11 75.1 148 30.4
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 2.5e-11 74.7 143 32.2
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 2.5e-11 74.7 140 32.1
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 4.2e-11 73.9 163 29.4
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 4.2e-11 73.9 182 29.1
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.2e-10 72.4 109 36.7
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.2e-10 72.4 109 36.7
Medtr2g078580 Medicago truncatula HOM05D007742 ORTHO05D004072 3.6e-10 70.9 131 35.9
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 4.7e-10 70.5 110 36.4
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 8.0e-10 69.7 106 37.7
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.0e-09 69.3 248 26.2
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.4e-09 68.9 174 25.9
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.8e-09 68.6 145 31.7
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.3e-09 68.2 109 35.8
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 2.3e-09 68.2 106 34.0
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 3.0e-09 67.8 122 36.1
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 4.0e-09 67.4 107 37.4
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 4.0e-09 67.4 152 30.3
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 4.0e-09 67.4 243 30.9
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 5.2e-09 67.0 110 36.4
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 8.8e-09 66.2 173 27.2
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 8.8e-09 66.2 108 36.1
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.1e-08 65.9 105 33.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.1e-08 65.9 190 28.9
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.0e-08 65.1 112 33.0
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.6e-08 64.7 93 36.6
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 2.6e-08 64.7 145 26.9
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 3.3e-08 64.3 422 21.1
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 3.3e-08 64.3 118 32.2
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 5.7e-08 63.5 142 29.6
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 7.5e-08 63.2 106 34.0
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 7.5e-08 63.2 492 22.6
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 9.7e-08 62.8 140 28.6
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 9.7e-08 62.8 109 33.0
CSS0036601 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.3e-07 62.4 275 29.1
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.3e-07 62.4 145 29.0
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 2.8e-07 61.2 117 32.5
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 8.2e-07 59.7 134 30.6
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 8.2e-07 59.7 97 35.1
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.8e-06 58.5 106 30.2
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 9.1e-06 56.2 129 28.7


User provided reference genes

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