Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 7.4e-74 280.4 138 100.0
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 1.1e-69 266.5 138 94.2
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 4.2e-61 238.0 140 83.6
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 3.9e-59 231.5 140 79.3
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 1.4e-48 196.4 141 70.2
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 2.9e-46 188.7 140 67.1
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 3.8e-46 188.3 140 67.1
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 3.8e-46 188.3 143 67.8
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 1.6e-44 183.0 143 68.5
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 4.7e-44 181.4 145 66.2
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 4.5e-39 164.9 141 60.3
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 3.2e-37 158.7 144 57.6
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 4.7e-36 154.8 139 55.4
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 1.4e-35 153.3 138 57.2
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 1.4e-35 153.3 141 57.4
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 1.8e-35 152.9 135 55.6
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 4.0e-35 151.8 142 57.7
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 5.2e-35 151.4 138 58.0
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.0e-34 149.4 140 58.6
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 3.4e-34 148.7 143 55.2
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 1.7e-33 146.4 138 57.2
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 1.7e-33 146.4 97 74.2
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 4.9e-33 144.8 140 54.3
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.1e-32 143.7 138 55.8
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.1e-32 143.7 138 55.8
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.4e-32 143.3 140 53.6
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 1.8e-32 142.9 143 55.9
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 3.1e-32 142.1 141 56.7
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 3.1e-32 142.1 144 55.6
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 3.1e-32 142.1 104 65.4
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 7.0e-32 141.0 141 56.7
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 1.2e-31 140.2 141 53.9
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 1.6e-31 139.8 142 50.7
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.6e-31 139.8 145 53.1
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 1.6e-31 139.8 140 55.0
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 1.6e-31 139.8 105 67.6
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 1.6e-31 139.8 127 56.7
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.6e-31 139.8 143 55.9
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 2.0e-31 139.4 145 53.8
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 2.7e-31 139.0 140 55.7
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 2.7e-31 139.0 139 55.4
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 3.5e-31 138.7 144 56.9
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 4.5e-31 138.3 141 54.6
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 7.7e-31 137.5 143 52.4
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.7e-30 136.3 136 54.4
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 2.9e-30 135.6 143 52.4
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 3.8e-30 135.2 105 62.9
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 3.8e-30 135.2 125 57.6
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 6.6e-30 134.4 143 51.7
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 6.6e-30 134.4 144 52.8
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 6.6e-30 134.4 139 56.1
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 8.6e-30 134.0 141 51.1
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 8.6e-30 134.0 143 51.7
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 1.9e-29 132.9 141 49.6
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 1.9e-29 132.9 110 60.9
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 2.5e-29 132.5 141 53.9
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 9.5e-29 130.6 137 49.6
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.6e-28 129.8 125 56.0
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 3.6e-28 128.6 134 53.0
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 4.7e-28 128.3 111 56.8
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 4.7e-28 128.3 141 51.1
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 6.1e-28 127.9 136 51.5
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 8.0e-28 127.5 139 50.4
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.4e-27 126.7 139 51.1
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.4e-27 126.7 92 66.3
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.4e-27 126.7 99 63.6
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.3e-27 125.9 141 51.8
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 5.2e-27 124.8 132 49.2
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 5.2e-27 124.8 131 51.9
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 5.2e-27 124.8 131 51.9
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 5.2e-27 124.8 140 47.9
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 6.8e-27 124.4 131 51.1
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 6.8e-27 124.4 131 51.1
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 6.8e-27 124.4 148 48.0
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 6.8e-27 124.4 129 53.5
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 6.8e-27 124.4 134 50.0
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 8.9e-27 124.0 112 58.9
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 8.9e-27 124.0 123 54.5
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 1.2e-26 123.6 102 58.8
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.2e-26 123.6 135 51.9
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.5e-26 123.2 132 49.2
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 2.0e-26 122.9 143 48.3
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 2.6e-26 122.5 134 51.5
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.6e-26 122.5 140 52.1
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 2.6e-26 122.5 124 49.2
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 4.4e-26 121.7 137 48.2
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 5.7e-26 121.3 141 47.5
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 1.3e-25 120.2 93 59.1
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 1.7e-25 119.8 113 53.1
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 2.2e-25 119.4 142 47.9
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 3.7e-25 118.6 106 56.6
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 4.9e-25 118.2 137 47.4
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 6.3e-25 117.9 79 73.4
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 8.3e-25 117.5 98 58.2
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 1.4e-24 116.7 121 50.4
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 3.2e-24 115.5 118 52.5
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 4.1e-24 115.2 133 45.9
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 4.1e-24 115.2 79 69.6
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 9.2e-24 114.0 78 69.2
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 9.2e-24 114.0 136 49.3
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 1.7e-22 109.8 138 47.1
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 1.7e-22 109.8 77 64.9
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 8.6e-22 107.5 77 63.6
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 3.3e-21 105.5 73 61.6
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 9.5e-21 104.0 81 63.0
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 1.0e-19 100.5 90 56.7
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 1.4e-19 100.1 115 47.8
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 4.0e-19 98.6 87 58.6
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 1.5e-18 96.7 90 52.2
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 2.6e-18 95.9 77 61.0
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 4.4e-18 95.1 78 60.3
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 1.3e-17 93.6 135 43.7
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.3e-17 93.6 119 43.7
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 1.7e-17 93.2 118 47.5
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 3.7e-17 92.0 90 46.7
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 8.3e-17 90.9 82 57.3
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 3.2e-16 89.0 87 46.0
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 4.1e-16 88.6 118 44.9
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 5.4e-16 88.2 116 47.4
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.1e-13 80.5 69 56.5
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 1.5e-13 80.1 73 54.8
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 9.5e-13 77.4 115 40.9
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 1.2e-12 77.0 70 55.7
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 4.4e-10 68.6 39 69.2
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 3.7e-09 65.5 98 41.8
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 4.9e-09 65.1 112 41.1
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 4.9e-09 65.1 86 40.7
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 6.4e-09 64.7 113 35.4
Atru.chr1.3017 Acer truncatum HOM05D006427 ORTHO05D008147 1.3e-06 57.0 60 48.3


User provided reference genes

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