Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 2.0e-239 832.0 424 100.0
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.1e-229 799.7 424 96.0
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.4e-216 755.4 424 90.3
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 7.3e-213 743.8 424 88.2
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 3.1e-203 711.8 426 83.8
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 5.4e-200 701.0 425 83.1
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 7.0e-200 700.7 433 82.0
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 8.6e-198 693.7 426 81.7
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.9e-197 692.6 426 81.5
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.7e-193 679.5 426 80.3
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.9e-192 676.0 424 80.2
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 3.2e-192 675.2 425 80.2
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.1e-192 674.9 426 79.3
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 7.1e-192 674.1 421 79.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 6.6e-190 667.5 426 79.6
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.5e-189 666.4 422 78.7
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.1e-188 662.5 425 78.8
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 8.1e-188 660.6 425 77.9
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.2e-186 656.8 425 78.6
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 4.4e-186 654.8 425 77.2
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 4.4e-186 654.8 422 78.7
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.7e-185 652.9 425 77.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.2e-185 652.5 425 77.6
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 6.4e-185 651.0 425 77.4
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 8.4e-185 650.6 425 77.2
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-184 649.8 425 77.4
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.2e-184 648.7 425 77.4
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 6.0e-183 644.4 425 76.7
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 7.8e-183 644.0 425 76.0
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.7e-182 642.9 425 76.5
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.3e-182 642.5 425 76.0
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.9e-181 639.4 425 75.3
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 2.5e-181 639.0 425 76.9
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.3e-181 638.6 426 75.8
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 4.3e-181 638.3 425 75.8
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 4.3e-181 638.3 425 76.0
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 5.6e-181 637.9 425 75.5
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 2.8e-180 635.6 424 75.2
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 6.2e-180 634.4 425 76.5
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.4e-179 632.5 425 75.3
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.1e-179 632.1 422 74.6
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.1e-179 632.1 425 73.9
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 6.9e-179 630.9 422 74.6
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 9.0e-179 630.6 425 74.8
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.5e-178 629.8 425 74.1
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.0e-178 629.4 422 74.2
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.0e-178 629.4 425 73.4
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.4e-178 628.6 422 73.5
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.3e-177 626.7 425 74.4
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.7e-177 626.3 422 73.9
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 2.9e-177 625.5 425 72.5
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 4.9e-177 624.8 425 73.6
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 6.4e-177 624.4 425 75.8
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 2.7e-175 619.0 463 71.7
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 2.7e-175 619.0 425 71.5
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.7e-175 619.0 422 73.9
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.6e-175 618.2 432 72.2
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.0e-175 617.8 425 74.1
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.3e-174 616.7 426 74.4
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 3.0e-174 615.5 426 74.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 3.9e-174 615.1 425 71.8
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 3.9e-174 615.1 426 73.7
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 6.6e-174 614.4 425 72.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.5e-173 613.2 423 74.2
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.5e-173 612.5 426 72.3
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 2.8e-172 609.0 459 69.7
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.4e-171 605.9 422 74.4
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 9.0e-171 604.0 422 73.0
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.0e-170 602.8 464 67.7
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.2e-169 599.4 422 71.3
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 4.9e-169 598.2 425 69.9
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.7e-167 592.4 429 69.7
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 3.9e-166 588.6 423 71.2
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.1e-165 587.0 423 69.5
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.9e-165 586.3 425 69.9
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.9e-165 586.3 425 70.1
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 5.6e-165 584.7 402 71.6
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.2e-159 567.0 433 68.1
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 7.9e-159 564.3 422 66.1
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.0e-158 563.9 425 70.1
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 6.7e-158 561.2 426 67.6
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.5e-157 559.3 425 67.5
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.4e-157 557.8 425 67.5
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 2.1e-156 556.2 423 68.3
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 2.4e-155 552.7 422 65.4
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.0e-155 550.8 425 68.5
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 3.4e-154 548.9 426 66.4
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 3.4e-154 548.9 425 68.0
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 3.8e-153 545.4 426 66.0
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.9e-152 543.1 383 72.1
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 5.5e-152 541.6 424 64.9
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 5.5e-152 541.6 426 66.4
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 7.1e-152 541.2 425 65.4
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.0e-150 537.3 426 64.8
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 3.0e-150 535.8 416 64.2
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 9.7e-149 530.8 426 63.8
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.3e-148 530.4 425 63.8
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 2.2e-148 529.6 427 64.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 2.8e-148 529.3 427 64.2
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.8e-148 529.3 426 64.1
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.7e-148 528.9 324 81.2
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 6.3e-148 528.1 425 64.0
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.8e-147 526.6 426 64.6
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 6.9e-147 524.6 426 64.1
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 3.4e-146 522.3 425 62.8
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 3.4e-146 522.3 437 64.5
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 7.6e-146 521.2 426 64.1
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.3e-145 520.4 425 63.1
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.3e-145 520.4 425 63.1
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 3.8e-145 518.8 313 82.7
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 5.0e-145 518.5 425 62.8
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.1e-144 517.3 425 63.5
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 2.5e-144 516.2 425 62.6
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.5e-144 516.2 426 63.1
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.6e-143 513.5 426 63.1
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.0e-142 510.8 425 61.9
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-139 500.7 426 61.3
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 4.1e-139 498.8 381 67.7
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 2.5e-136 489.6 386 66.8
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.5e-136 488.4 444 59.7
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 9.7e-133 477.6 353 67.4
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.8e-131 473.4 424 57.1
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 2.9e-129 466.1 427 54.8
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.1e-127 459.9 427 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 8.0e-127 458.0 450 52.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 9.1e-123 444.5 390 62.3
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.4e-118 430.6 396 59.3
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 9.1e-115 417.9 428 53.0
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.6e-109 399.8 241 84.2
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 9.1e-107 391.3 239 83.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.0e-102 377.9 336 59.8
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 5.2e-102 375.6 284 64.4
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 4.1e-99 365.9 410 52.2
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 7.0e-99 365.2 430 52.8
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 7.3e-96 355.1 356 55.9
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 1.6e-74 284.3 434 38.9
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.9e-72 277.3 214 66.8
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.8e-62 244.2 325 46.8
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 2.6e-61 240.4 341 40.5
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 3.8e-60 236.5 190 66.3
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.8e-55 219.5 194 61.3
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 4.9e-52 209.5 358 41.1
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 6.0e-50 202.6 194 57.2
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.4e-46 191.4 305 41.6
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 9.0e-46 188.7 251 46.2
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 3.8e-44 183.3 142 62.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 2.5e-40 170.6 332 33.1
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 5.7e-32 142.9 150 52.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 4.5e-29 133.3 105 69.5
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.5e-28 129.0 120 55.8
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.7e-23 113.6 76 71.1
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 4.8e-23 113.2 76 69.7
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 4.8e-23 113.2 76 69.7
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 8.2e-23 112.5 124 47.6
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 7.7e-21 105.9 414 23.9
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.4e-14 85.1 57 75.4
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.5e-13 81.6 62 62.9
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.5e-13 81.6 73 61.6
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.7e-10 70.9 75 49.3
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 3.6e-10 70.5 53 71.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 6.7e-09 66.2 49 65.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 6.7e-09 66.2 49 65.3
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 1.1e-08 65.5 204 27.0
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.5e-08 65.1 204 27.5
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.5e-08 65.1 213 27.2
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.0e-08 64.7 204 27.0
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 2.0e-08 64.7 204 27.0
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 2.0e-08 64.7 204 27.0
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 2.6e-08 64.3 204 27.0
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.6e-08 64.3 204 27.0
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 3.3e-08 63.9 204 27.0
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 3.3e-08 63.9 204 27.0
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 3.3e-08 63.9 213 27.2
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 3.3e-08 63.9 213 27.2
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 3.3e-08 63.9 213 27.2
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 4.4e-08 63.5 204 27.0
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 5.7e-08 63.2 204 26.5
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 7.4e-08 62.8 213 26.8
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 7.4e-08 62.8 213 26.8
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.7e-07 61.6 133 36.1
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 2.8e-07 60.8 134 27.6
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 3.7e-07 60.5 204 26.0
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 3.7e-07 60.5 204 26.0
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 3.7e-07 60.5 204 26.0
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 6.3e-07 59.7 38 65.8
SGA_v2.0_scaffold80G25836 Striga asiatica HOM05D002716 ORTHO05D003324 6.3e-07 59.7 201 24.9
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.1e-06 57.4 49 61.2


User provided reference genes

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