Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 4.3e-227 791.2 465 100.0
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 2.3e-164 582.8 467 77.3
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 5.6e-158 561.6 468 76.1
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 2.4e-145 519.6 482 69.9
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 3.5e-144 515.8 470 68.9
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 3.1e-140 502.7 477 67.7
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 5.1e-135 485.3 475 61.7
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 6.7e-135 485.0 471 59.0
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.4e-132 477.2 483 62.9
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.2e-131 474.2 473 65.1
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 5.8e-131 471.9 472 65.0
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 1.0e-130 471.1 481 62.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.0e-130 471.1 472 64.8
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.2e-130 469.9 472 64.8
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 2.9e-130 469.5 473 62.2
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 6.5e-130 468.4 480 57.9
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 4.2e-129 465.7 470 57.2
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 1.2e-128 464.2 480 61.5
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 2.3e-127 459.9 481 59.9
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 5.9e-123 445.3 484 54.8
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 2.2e-122 443.4 489 54.2
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 5.5e-121 438.7 489 53.4
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 4.6e-120 435.6 419 59.2
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 2.5e-118 429.9 480 52.7
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 5.7e-118 428.7 494 51.8
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.3e-117 427.6 480 52.1
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.6e-117 427.2 480 51.9
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 2.8e-117 426.4 481 57.6
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 1.8e-116 423.7 482 53.5
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 1.8e-116 423.7 472 52.3
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 9.0e-116 421.4 477 51.8
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.2e-115 421.0 478 57.3
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.0e-115 420.2 480 52.3
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 3.4e-115 419.5 476 52.7
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.2e-114 416.8 497 54.7
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 5.5e-113 412.1 476 50.2
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.9e-112 408.3 477 49.7
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 7.9e-112 408.3 487 52.4
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 7.9e-112 408.3 468 51.9
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.0e-110 403.7 491 49.5
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.0e-110 403.7 491 49.5
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 9.7e-110 401.4 400 58.2
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.7e-109 400.6 472 51.5
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 1.4e-108 397.5 471 51.0
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 3.1e-108 396.4 484 49.2
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.0e-106 391.3 475 49.7
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 1.1e-105 387.9 480 51.7
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.4e-105 387.5 472 49.8
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.4e-105 387.5 479 57.2
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.9e-105 387.1 354 61.9
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 3.2e-105 386.3 465 48.4
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 7.2e-105 385.2 478 48.1
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.6e-104 384.0 472 51.7
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 2.7e-104 383.3 400 53.8
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 7.9e-104 381.7 407 55.0
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.4e-103 380.9 285 79.6
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 6.7e-103 378.6 482 50.8
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.0e-102 377.1 486 53.5
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.4e-102 375.9 489 52.8
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 1.7e-101 374.0 470 48.1
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-100 371.3 415 52.8
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 2.4e-100 370.2 475 48.4
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 3.5e-99 366.3 326 68.1
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 5.9e-99 365.5 476 54.0
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 2.5e-97 360.1 471 53.1
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.2e-97 359.8 482 50.0
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.1e-96 357.1 399 52.9
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 4.7e-96 355.9 389 52.7
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.4e-95 354.4 400 52.0
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 3.7e-93 346.3 471 46.1
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.1e-92 344.7 467 47.3
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.4e-92 344.4 482 45.9
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.4e-92 344.4 470 52.6
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 9.1e-92 341.7 467 46.3
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 1.2e-91 341.3 488 45.1
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 4.5e-91 339.3 464 45.7
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 1.3e-90 337.8 482 48.5
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 1.3e-90 337.8 482 48.5
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.5e-90 335.5 475 53.1
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 8.5e-90 335.1 480 46.0
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.1e-89 334.7 333 53.8
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 1.1e-89 334.7 490 44.9
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.5e-89 333.6 480 45.8
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.4e-89 331.6 474 51.1
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.2e-88 331.3 477 47.8
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 6.1e-88 328.9 489 44.6
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-87 328.2 471 52.4
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 1.4e-87 327.8 495 45.3
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.8e-87 327.4 470 44.3
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.3e-87 327.0 476 49.8
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.2e-86 324.7 311 55.0
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.2e-86 324.7 436 46.1
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 3.4e-86 323.2 493 44.8
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 9.8e-86 321.6 233 67.4
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.7e-85 319.7 477 48.2
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.8e-85 319.3 476 48.1
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 8.3e-85 318.5 430 47.7
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-83 314.7 425 49.2
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 4.5e-83 312.8 472 43.0
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 5.9e-83 312.4 335 51.0
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.5e-82 308.5 471 51.6
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.1e-81 308.1 471 46.7
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.5e-81 307.0 370 49.5
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-81 307.0 291 67.4
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 3.6e-80 303.1 401 49.1
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.4e-79 301.2 335 49.3
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 2.3e-79 300.4 498 42.0
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 4.4e-78 296.2 428 46.7
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.7e-77 294.3 357 55.2
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.1e-76 289.7 476 47.5
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.1e-76 289.7 476 47.5
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 6.6e-74 282.3 402 44.5
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 1.9e-73 280.8 414 44.4
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.3e-73 280.0 481 49.3
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.6e-73 279.3 486 40.7
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 9.5e-73 278.5 501 39.9
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 4.4e-70 269.6 247 72.1
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 9.8e-70 268.5 464 40.1
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.7e-67 260.4 419 46.5
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.3e-65 253.4 339 44.8
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 4.4e-62 243.0 314 50.0
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 9.8e-62 241.9 385 43.9
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.3e-61 241.5 269 52.8
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-61 241.5 472 42.4
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-58 231.9 296 45.6
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.0e-58 230.3 495 39.8
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 3.3e-57 226.9 182 60.4
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 3.2e-52 210.3 458 44.8
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.5e-51 206.8 292 49.0
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 2.8e-48 197.2 414 36.0
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.8e-45 186.8 154 61.0
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.1e-42 176.4 176 53.4
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-41 174.1 243 43.2
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.1e-40 171.0 169 76.3
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.4e-39 167.5 314 39.5
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.9e-38 162.2 168 75.6
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 7.3e-33 146.0 275 41.1
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.4e-31 141.0 121 66.1
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.1e-31 140.6 139 55.4
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 1.9e-28 131.3 200 50.0
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 2.4e-28 131.0 123 52.8
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 5.4e-28 129.8 105 59.0
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.9e-27 125.9 235 37.0
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.0e-26 124.0 86 72.1
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-21 108.6 150 44.7
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.4e-20 105.1 72 72.2
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-18 99.0 120 45.0
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 5.1e-18 96.7 77 57.1
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.7e-16 90.5 72 63.9
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 2.4e-15 87.8 149 35.6
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-10 72.4 89 43.8
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 5.3e-07 60.1 222 25.7
CANSAT54G1695 Cannabis sativa HOM05D002125 ORTHO05D002105 1.2e-06 58.9 222 23.9
arahy.Tifrunner.gnm1.ann1.IA95G7 Arachis hypogaea HOM05D002503 ORTHO05D002810 1.5e-06 58.5 379 25.9
MD12G1181200 Malus domestica HOM05D002125 ORTHO05D002105 1.5e-06 58.5 233 24.9
Aa31LG5G90 Aethionema arabicum HOM05D002503 ORTHO05D002810 2.0e-06 58.2 399 25.3
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 2.0e-06 58.2 226 23.0
arahy.Tifrunner.gnm1.ann1.MBUZ7W Arachis hypogaea HOM05D002503 ORTHO05D002810 2.6e-06 57.8 385 27.0
CANSAT56G3712 Cannabis sativa HOM05D002503 ORTHO05D002810 4.5e-06 57.0 407 25.8
ECA232G0019 Erigeron canadensis HOM05D002503 ORTHO05D002810 4.5e-06 57.0 190 27.4
CANSAT56G2174 Cannabis sativa HOM05D002503 ORTHO05D002810 5.9e-06 56.6 420 26.4
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 5.9e-06 56.6 226 24.8
Actinidia13582 Actinidia chinensis HOM05D002503 ORTHO05D002810 7.6e-06 56.2 391 25.8
CARHR264100 Cardamine hirsuta HOM05D002503 ORTHO05D002810 7.6e-06 56.2 421 25.2
PGR042G2834 Punica granatum HOM05D002503 ORTHO05D002810 7.6e-06 56.2 411 25.3
SalBow5G0120 Salvia bowleyana HOM05D002503 ORTHO05D002810 7.6e-06 56.2 216 25.5
Hund08778 Selenicereus undatus HOM05D003317 ORTHO05D003696 7.6e-06 56.2 204 30.4
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 1.0e-05 55.8 222 22.5
SalBow5G3928 Salvia bowleyana HOM05D002503 ORTHO05D002810 1.0e-05 55.8 203 25.6
GSVIVG01030257001 Vitis vinifera HOM05D002125 ORTHO05D002105 1.0e-05 55.8 224 25.9


User provided reference genes

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