Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 7.7e-98 360.5 189 100.0
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 1.0e-81 307.0 192 85.4
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 8.6e-81 303.9 195 84.1
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 2.3e-78 295.8 189 84.1
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 3.0e-78 295.4 192 82.3
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 1.5e-77 293.1 189 83.6
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 1.5e-77 293.1 193 82.9
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 3.4e-77 292.0 242 68.6
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 5.6e-72 274.6 191 78.5
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 8.9e-70 267.3 193 76.2
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 2.6e-69 265.8 188 78.7
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 9.8e-69 263.8 191 74.9
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 9.8e-69 263.8 191 74.9
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 3.7e-68 261.9 187 79.7
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 4.9e-68 261.5 194 74.7
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 3.2e-67 258.8 191 73.8
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 5.4e-67 258.1 191 72.3
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 5.4e-67 258.1 187 78.6
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 2.7e-66 255.8 191 72.3
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 3.5e-66 255.4 191 73.8
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 3.5e-66 255.4 191 73.8
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.5e-66 255.4 191 73.8
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 4.6e-66 255.0 193 73.6
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 6.0e-66 254.6 187 77.5
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 7.8e-66 254.2 190 75.8
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 1.0e-65 253.8 191 73.8
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.9e-64 249.6 191 72.3
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 5.6e-64 248.1 189 72.0
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.6e-63 246.5 191 73.3
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 2.8e-63 245.7 193 72.0
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 8.0e-63 244.2 194 68.6
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 1.1e-62 243.8 190 70.5
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 2.3e-62 242.7 191 71.7
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 3.1e-62 242.3 180 75.6
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 3.4e-61 238.8 191 70.7
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 3.4e-61 238.8 191 70.7
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 4.4e-61 238.4 191 70.2
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 4.1e-59 231.9 191 72.8
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 2.1e-58 229.6 193 69.4
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 3.0e-57 225.7 194 66.5
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 3.0e-57 225.7 187 66.8
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 8.6e-57 224.2 188 67.0
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 1.9e-56 223.0 191 69.6
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 2.5e-56 222.6 194 64.9
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 2.5e-56 222.6 195 67.2
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 2.5e-56 222.6 195 67.2
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 3.3e-56 222.2 191 70.7
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 3.3e-56 222.2 195 67.2
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 7.3e-56 221.1 193 67.4
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 1.2e-55 220.3 183 69.9
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 1.2e-55 220.3 194 67.0
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 6.2e-55 218.0 191 61.8
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 6.2e-55 218.0 188 67.0
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 1.1e-54 217.2 191 65.4
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 2.3e-54 216.1 197 61.9
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 3.1e-54 215.7 191 68.1
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 4.4e-53 211.8 195 65.1
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 5.8e-53 211.5 191 67.5
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.3e-52 210.3 194 66.0
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 4.9e-52 208.4 194 63.9
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 4.9e-52 208.4 197 61.9
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 3.2e-51 205.7 193 63.7
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 5.4e-51 204.9 192 65.1
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 7.1e-51 204.5 192 62.0
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 7.1e-51 204.5 191 61.3
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 9.2e-51 204.1 193 62.2
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 1.6e-50 203.4 193 62.2
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 1.0e-49 200.7 193 62.2
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 2.3e-49 199.5 195 62.1
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 3.0e-49 199.1 195 62.6
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 6.6e-49 198.0 194 62.9
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 6.6e-49 198.0 174 67.2
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 2.5e-48 196.1 192 60.4
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 4.3e-48 195.3 193 59.1
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 5.6e-48 194.9 194 59.8
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 7.3e-48 194.5 183 62.8
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 1.6e-47 193.4 169 65.1
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 2.8e-47 192.6 191 62.3
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 4.7e-47 191.8 188 58.0
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 4.7e-47 191.8 188 58.0
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 4.0e-46 188.7 199 57.8
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 6.8e-46 188.0 188 55.3
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 1.2e-45 187.2 191 56.5
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 1.2e-45 187.2 193 56.5
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.5e-45 186.8 186 58.6
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 3.4e-45 185.7 194 58.2
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 7.6e-45 184.5 191 55.0
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 7.6e-45 184.5 190 57.4
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 3.2e-43 179.1 187 56.1
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 3.2e-43 179.1 194 59.8
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 5.4e-43 178.3 197 52.8
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 1.6e-42 176.8 191 56.5
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 8.7e-41 171.0 191 56.0
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 8.7e-41 171.0 146 66.4
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 5.6e-40 168.3 190 56.8
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 1.2e-39 167.2 204 48.0
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 3.1e-38 162.5 148 64.2
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 5.3e-38 161.8 192 51.6
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 5.3e-38 161.8 192 53.6
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 2.6e-37 159.5 188 49.5
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 4.4e-37 158.7 176 55.1
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 4.4e-37 158.7 214 50.5
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 5.8e-37 158.3 192 53.1
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 1.6e-34 150.2 187 50.8
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 2.1e-34 149.8 146 61.0
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.7e-33 146.7 190 47.9
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.7e-33 146.7 190 47.9
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 2.3e-33 146.4 190 50.0
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 2.3e-33 146.4 220 46.8
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 3.0e-33 146.0 190 49.5
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 5.1e-33 145.2 188 46.8
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 6.6e-33 144.8 203 46.8
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 1.5e-32 143.7 111 67.6
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 8.1e-31 137.9 190 46.3
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 2.9e-28 129.4 146 56.2
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 9.3e-27 124.4 121 61.2
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.2e-26 124.0 139 55.4
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 4.6e-26 122.1 147 51.7
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 4.6e-26 122.1 146 54.1
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 3.9e-25 119.0 203 42.4
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 1.1e-24 117.5 168 46.4
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.1e-24 117.5 74 83.8
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.5e-24 117.1 82 75.6
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 3.3e-24 115.9 82 74.4
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 1.3e-23 114.0 82 73.2
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 2.6e-21 106.3 59 91.5
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 6.4e-20 101.7 89 57.3
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 1.2e-18 97.4 158 46.8
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 2.1e-18 96.7 102 52.9
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 6.7e-17 91.7 88 59.1
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 1.1e-16 90.9 96 56.2
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.3e-15 87.4 121 51.2
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 1.8e-14 83.6 83 59.0
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 2.4e-14 83.2 85 58.8
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 1.2e-13 80.9 74 56.8
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 7.6e-13 78.2 57 77.2
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 3.2e-11 72.8 137 40.9
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 6.1e-10 68.6 89 48.3
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 6.1e-10 68.6 177 31.6
CiPaw.15G164900 Carya illinoinensis HOM05D005762 ORTHO05D006823 4.8e-07 58.9 85 45.9


User provided reference genes

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