Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 1.6e-274 948.7 468 100.0
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 1.6e-261 905.6 468 95.9
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 1.5e-259 899.0 468 94.0
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 1.6e-253 879.0 468 92.1
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 1.7e-247 859.0 468 89.1
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 5.0e-247 857.4 465 89.7
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 2.1e-245 852.0 468 88.5
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 3.0e-244 848.2 468 88.0
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 3.0e-244 848.2 468 88.0
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 1.5e-243 845.9 469 87.6
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 4.5e-240 834.3 468 85.7
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 4.7e-237 824.3 468 84.2
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 6.1e-237 823.9 468 84.6
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 1.4e-236 822.8 468 84.0
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 2.0e-235 818.9 468 85.5
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 1.7e-234 815.8 460 85.0
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 2.2e-234 815.5 457 85.3
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 1.1e-233 813.1 468 82.5
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 1.4e-233 812.8 460 84.3
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 1.4e-233 812.8 461 84.4
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 1.8e-233 812.4 453 85.0
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 1.8e-233 812.4 468 82.5
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 5.3e-233 810.8 468 82.3
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 7.0e-233 810.4 459 83.7
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 9.1e-233 810.1 468 83.1
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 2.6e-232 808.5 468 82.5
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 5.9e-232 807.4 468 82.3
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 8.8e-228 793.5 466 82.0
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 4.4e-227 791.2 453 83.7
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 5.7e-227 790.8 461 82.2
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 1.7e-226 789.3 462 81.4
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 2.2e-226 788.9 462 82.3
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 4.8e-226 787.7 495 77.6
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 1.4e-225 786.2 468 80.8
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 4.1e-225 784.6 466 81.5
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 4.1e-225 784.6 466 81.5
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 5.3e-225 784.3 471 80.5
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 2.0e-224 782.3 466 80.5
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 2.0e-224 782.3 466 80.5
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 1.0e-223 780.0 462 80.3
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 1.7e-223 779.2 460 81.5
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 8.5e-223 776.9 454 83.0
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 7.2e-222 773.9 461 80.5
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 5.2e-220 767.7 462 78.8
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 6.8e-220 767.3 467 79.2
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 8.8e-220 766.9 459 79.5
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 1.5e-219 766.1 458 80.1
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 3.4e-219 765.0 458 79.9
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 4.4e-219 764.6 461 79.2
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 2.4e-217 758.8 462 78.1
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 2.4e-217 758.8 463 78.2
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 4.1e-217 758.1 466 78.3
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 4.1e-217 758.1 462 77.9
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 7.0e-217 757.3 467 78.6
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 5.9e-216 754.2 468 78.2
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 7.7e-216 753.8 462 77.1
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 1.3e-215 753.1 464 78.7
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 1.7e-215 752.7 462 77.5
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 2.3e-215 752.3 466 78.3
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 5.0e-215 751.1 466 77.9
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 5.0e-215 751.1 470 77.2
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 5.0e-215 751.1 467 77.5
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 8.6e-215 750.4 468 77.6
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 1.1e-214 750.0 458 77.7
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 1.1e-214 750.0 461 78.7
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 1.5e-214 749.6 468 77.4
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 1.5e-214 749.6 462 76.6
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 2.5e-214 748.8 461 78.1
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 3.3e-214 748.4 468 77.6
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.3e-214 748.4 461 78.1
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 7.2e-214 747.3 469 77.4
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 9.5e-214 746.9 462 76.6
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 3.6e-213 745.0 469 77.2
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 5.2e-212 741.1 462 77.9
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 2.0e-211 739.2 461 76.4
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 1.3e-210 736.5 462 75.8
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 2.2e-210 735.7 458 77.5
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 3.7e-210 734.9 468 75.4
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 3.7e-210 734.9 450 77.1
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 6.3e-210 734.2 472 74.4
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 5.4e-209 731.1 462 75.8
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 5.4e-209 731.1 462 76.2
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 9.2e-209 730.3 433 80.6
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 1.2e-208 729.9 458 75.5
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 2.7e-208 728.8 518 69.5
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 4.5e-208 728.0 467 76.0
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 2.3e-207 725.7 455 75.4
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 6.6e-207 724.2 480 73.3
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 8.6e-207 723.8 459 75.4
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 2.3e-204 715.7 453 75.9
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 2.3e-204 715.7 479 73.3
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 6.8e-204 714.1 521 67.8
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 6.2e-197 691.0 461 72.0
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 5.2e-196 688.0 484 69.8
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 1.9e-193 679.5 504 68.8
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 4.1e-193 678.3 462 72.9
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 1.2e-192 676.8 504 66.5
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 3.9e-191 671.8 459 71.5
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 5.4e-185 651.4 431 73.1
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 1.6e-181 639.8 460 67.2
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 4.4e-179 631.7 338 89.9
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 4.4e-171 605.1 381 76.1
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 1.1e-164 583.9 461 62.7
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 4.5e-163 578.6 326 83.7
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 2.1e-160 569.7 460 60.2
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 7.9e-160 567.8 469 59.3
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 4.6e-152 542.0 456 59.0
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 2.4e-148 529.6 416 62.5
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 4.0e-148 528.9 311 82.6
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 4.5e-147 525.4 463 56.8
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 6.5e-146 521.5 333 76.0
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.7e-138 496.9 455 56.0
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.4e-127 460.7 394 58.4
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 5.0e-122 442.2 342 66.1
FAN14G5139 Fragaria x ananassa HOM05D004789 ORTHO05D006078 8.5e-122 441.4 251 81.7
PRCOL_00003473 Prasinoderma coloniale HOM05D004789 ORTHO05D006078 6.7e-119 431.8 501 49.3
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 1.4e-116 424.1 257 80.5
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 3.2e-113 412.9 273 72.2
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 1.4e-108 397.5 272 69.1
MCO11G683 Micromonas commoda HOM05D004789 ORTHO05D006078 1.2e-107 394.4 471 46.7
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 2.2e-106 390.2 722 35.7
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 9.8e-102 374.8 459 45.5
Cpa.g.sc2508.1 Carica papaya HOM05D004789 ORTHO05D006078 3.7e-101 372.9 216 83.3
Nn1g09737 Nelumbo nucifera HOM05D004789 ORTHO05D006078 3.7e-101 372.9 223 82.5
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 4.1e-100 369.4 331 55.0
Nn1g09776 Nelumbo nucifera HOM05D004789 ORTHO05D006078 5.2e-95 352.4 213 77.0
Lsat_1_v5_gn_7_32541 Lactuca sativa HOM05D004789 ORTHO05D006078 1.2e-88 331.3 247 69.2
SEGI_29409 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 6.4e-85 318.9 272 58.8
SEGI_33759 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 5.2e-79 299.3 216 66.2
Cpa.g.sc39.15 Carica papaya HOM05D004789 ORTHO05D006078 5.8e-78 295.8 164 84.1
SEGI_15354 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 2.5e-57 227.3 167 65.3
Actinidia39978 Actinidia chinensis HOM05D004789 ORTHO05D006078 1.3e-40 171.8 127 71.7
Hund24180 Selenicereus undatus HOM05D004789 ORTHO05D006078 8.1e-40 169.1 252 42.5
ECA236G3464 Erigeron canadensis HOM05D004789 ORTHO05D006078 1.4e-39 168.3 119 67.2
Hund01197 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.4e-38 163.7 247 42.1
Cpa.g.sc39.16 Carica papaya HOM05D004789 ORTHO05D006078 6.5e-37 159.5 88 85.2
Hund01346 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.4e-36 158.3 274 36.9
Hund01450 Selenicereus undatus HOM05D004789 ORTHO05D006078 2.7e-35 154.1 110 66.4
SalBow1G4379 Salvia bowleyana HOM05D004789 ORTHO05D006078 8.2e-32 142.5 80 78.8
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 7.2e-28 129.4 263 30.8
Hma1.2p1_0199F.1_g085710 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 2.4e-23 114.4 62 79.0
SEGI_24407 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 2.5e-17 94.4 98 46.9
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 4.8e-16 90.1 283 26.1
SEGI_07080 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 4.8e-16 90.1 70 58.6
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 5.9e-14 83.2 282 25.9
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 5.5e-12 76.6 237 26.6
Sopen01g035780 Solanum pennellii HOM05D004789 ORTHO05D051096 7.2e-12 76.3 54 72.2
Solyc01g089930.2 Solanum lycopersicum HOM05D004789 ORTHO05D051096 9.4e-12 75.9 54 72.2
Hund12586 Selenicereus undatus HOM05D004789 ORTHO05D006078 4.7e-11 73.6 84 50.0
CDE05G2962 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 5.1e-10 70.1 41 75.6
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 5.1e-10 70.1 44 72.7
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 1.5e-09 68.6 44 70.5
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 2.6e-09 67.8 251 23.9
Hund26061 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.3e-09 67.4 55 60.0
Solyc01g094230.4 Solanum lycopersicum HOM05D004789 ORTHO05D390785 1.3e-08 65.5 43 69.8
Sopen01g029920 Solanum pennellii HOM05D004789 ORTHO05D393610 4.8e-08 63.5 39 82.1
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 1.6e-06 58.5 247 21.5
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 3.5e-06 57.4 204 21.6
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 5.9e-06 56.6 233 25.8
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 7.7e-06 56.2 232 24.6


User provided reference genes

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