Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1907.1 956 100.0
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1789.2 957 94.7
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1669.1 900 91.7
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1635.5 886 91.0
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1612.4 962 84.6
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1601.3 963 84.4
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1598.9 948 84.7
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1568.5 929 84.0
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1546.2 957 81.3
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1539.2 961 80.6
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1516.5 889 84.3
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1464.5 826 87.5
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1409.8 967 74.9
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1404.4 959 73.7
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1401.0 909 77.6
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1394.4 908 76.8
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1394.0 962 72.7
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1390.9 958 73.2
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1388.6 968 72.8
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1388.6 934 74.6
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1388.2 968 72.8
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1382.9 969 72.7
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1382.5 960 72.2
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1378.2 994 70.9
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1372.8 914 75.8
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1368.6 920 74.5
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1368.2 951 72.1
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1368.2 924 73.9
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1367.1 951 72.1
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1366.7 907 76.4
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1360.5 920 73.8
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1350.1 909 73.9
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1349.0 927 73.0
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1340.1 910 74.6
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1337.8 890 76.2
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1337.8 902 74.6
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1333.9 964 71.7
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1333.9 890 74.7
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1333.2 933 72.3
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1332.4 897 74.7
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1332.4 888 74.7
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1328.9 964 71.5
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1327.4 962 70.3
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1323.1 962 69.5
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1318.1 913 73.2
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1316.6 946 70.6
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1315.8 895 73.9
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1314.7 953 70.4
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1314.7 949 70.1
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1311.2 889 74.4
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1310.0 881 73.6
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1308.1 955 70.4
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1302.3 907 72.2
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1299.6 1007 67.0
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1285.8 898 72.3
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1281.2 898 72.3
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1278.8 966 68.8
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1277.3 901 70.9
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1270.4 889 71.3
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1270.4 928 70.8
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1260.7 813 77.7
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1259.6 968 68.3
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1254.2 952 69.9
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1244.2 884 70.7
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1243.0 959 67.8
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1239.6 913 69.9
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1223.4 796 75.5
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1214.1 919 68.2
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1213.7 925 67.0
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1213.7 926 67.6
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1211.8 882 68.9
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1209.1 887 69.7
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1207.6 906 67.1
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1207.2 919 66.8
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1206.8 914 68.1
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1204.1 904 67.3
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1199.9 906 66.9
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1198.3 920 66.5
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1191.0 899 66.4
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1187.6 883 67.6
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1169.8 884 66.7
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1167.5 900 65.0
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1159.4 887 65.3
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1154.0 933 65.0
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1153.7 897 65.2
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1148.3 885 65.1
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1146.3 888 64.9
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1146.3 903 66.1
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1139.4 892 64.8
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1136.3 928 65.2
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1136.3 907 63.7
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1135.9 903 64.3
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1100.1 810 69.0
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1089.3 914 62.7
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 3.7e-281 971.8 805 64.0
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 1.8e-272 943.0 754 63.8
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 4.1e-272 941.8 888 53.2
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.5e-261 906.7 902 51.6
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 4.9e-257 891.7 683 67.6
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 6.3e-257 891.3 600 74.2
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 9.5e-245 850.9 591 73.1
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.7e-241 839.0 591 72.8
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 3.3e-237 825.9 591 71.6
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 1.6e-215 753.8 940 46.8
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 3.4e-210 736.1 561 66.8
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 6.4e-201 705.3 892 47.0
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.6e-199 700.7 517 68.5
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 4.5e-194 682.6 445 73.5
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 8.7e-190 668.3 624 55.1
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 2.2e-185 653.7 533 62.3
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 2.7e-183 646.7 412 76.9
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 4.3e-181 639.4 763 45.7
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.1e-165 588.2 398 72.6
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 4.7e-127 459.9 304 76.0
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 7.8e-122 442.6 268 80.2
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 1.6e-103 381.7 282 68.1
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 1.3e-95 355.5 257 70.4
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.0e-93 348.2 338 58.0
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 3.8e-84 317.4 238 65.1
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 9.3e-83 312.8 217 75.1
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 9.0e-70 269.6 172 75.6
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 4.1e-62 244.2 248 52.4
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.4e-54 219.2 216 49.5
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.2e-43 181.4 233 50.2
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.9e-36 158.3 98 82.7
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 8.5e-36 156.8 174 56.3
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 3.5e-29 134.8 106 70.8
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 3.7e-23 114.8 82 67.1
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 1.4e-22 112.8 593 20.7
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 3.5e-21 108.2 69 76.8
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-19 101.3 268 29.5
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 7.3e-19 100.5 58 86.2
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.3e-07 63.2 37 83.8
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 1.7e-07 62.8 112 36.6
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 4.1e-06 58.2 31 87.1


User provided reference genes

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