Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 2.1e-44 181.8 82 100.0
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 1.5e-34 149.1 82 84.1
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.6e-30 133.7 69 87.0
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.5e-29 131.7 82 74.4
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 2.5e-29 131.7 82 74.4
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 2.8e-28 128.3 82 74.4
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 1.1e-27 126.3 82 73.2
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 1.4e-27 125.9 82 70.7
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 1.8e-27 125.6 82 72.0
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 1.8e-27 125.6 82 72.0
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 1.8e-27 125.6 82 72.0
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 1.8e-27 125.6 82 72.0
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 3.1e-27 124.8 82 72.0
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 3.1e-27 124.8 82 70.7
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 4.0e-27 124.4 82 70.7
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 5.3e-27 124.0 82 72.0
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 5.3e-27 124.0 82 72.0
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 1.2e-26 122.9 82 72.0
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 1.5e-26 122.5 81 71.6
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 2.6e-26 121.7 79 72.2
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 2.6e-26 121.7 82 72.0
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 2.6e-26 121.7 82 72.0
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 4.5e-26 120.9 82 69.5
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 5.8e-26 120.6 82 69.5
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 7.6e-26 120.2 77 72.7
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 9.9e-26 119.8 82 72.0
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 9.9e-26 119.8 82 72.0
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 9.9e-26 119.8 82 72.0
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 1.3e-25 119.4 82 70.7
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.3e-25 119.4 82 69.5
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.9e-25 118.2 78 70.5
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 4.9e-25 117.5 77 71.4
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 8.4e-25 116.7 81 66.7
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 1.4e-24 115.9 82 69.5
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 1.9e-24 115.5 82 69.5
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 2.4e-24 115.2 80 71.2
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 9.3e-24 113.2 72 72.2
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 1.2e-23 112.8 77 68.8
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 2.1e-23 112.1 81 66.7
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 3.5e-23 111.3 82 64.6
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.3e-22 109.4 81 66.7
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.3e-22 109.4 81 66.7
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 1.8e-22 109.0 70 72.9
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 1.8e-22 109.0 81 65.4
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 1.8e-22 109.0 81 65.4
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.1e-21 106.3 78 64.1
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-21 105.5 76 68.4
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-21 105.5 76 68.4
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.9e-21 105.5 76 68.4
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.9e-21 105.5 76 68.4
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-21 105.5 76 68.4
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.9e-21 105.5 75 69.3
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.3e-21 104.8 82 64.6
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 5.6e-21 104.0 69 71.0
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 5.6e-21 104.0 69 71.0
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 5.6e-21 104.0 69 71.0
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 7.4e-21 103.6 54 83.3
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 7.4e-21 103.6 74 64.9
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 7.4e-21 103.6 57 80.7
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 1.6e-20 102.4 55 81.8
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 2.8e-20 101.7 55 81.8
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 3.7e-20 101.3 55 81.8
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 1.8e-19 99.0 69 68.1
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 1.8e-19 99.0 70 67.1
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 4.0e-19 97.8 55 80.0
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 6.9e-19 97.1 59 78.0
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.5e-18 95.9 55 78.2
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 5.8e-18 94.0 47 87.2
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 5.8e-18 94.0 47 87.2
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 5.8e-18 94.0 47 87.2
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-18 94.0 47 87.2
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-18 94.0 47 87.2
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-18 94.0 47 87.2
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-18 94.0 47 87.2
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-18 94.0 47 87.2
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 5.8e-18 94.0 47 87.2
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-18 94.0 47 87.2
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 2.9e-17 91.7 82 58.5
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 2.9e-17 91.7 48 83.3
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 3.8e-17 91.3 46 87.0
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 4.9e-17 90.9 55 72.7
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 6.5e-17 90.5 49 81.6
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 1.9e-16 89.0 55 74.5
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 7.1e-16 87.0 47 83.0
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 6.0e-15 84.0 49 79.6
BolC9t56806H Brassica oleracea HOM05D001200 ORTHO05D009713 1.0e-14 83.2 47 78.7
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 1.0e-14 83.2 47 76.6
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-13 79.7 38 86.8
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 1.1e-13 79.7 46 71.7
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.5e-13 79.3 47 72.3
Medtr4g026420 Medicago truncatula HOM05D001200 ORTHO05D009713 1.5e-13 79.3 77 53.2
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.9e-13 79.0 38 86.8
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 7.4e-13 77.0 52 65.4
Lalb_Chr18g0049421 Lupinus albus HOM05D001200 ORTHO05D009713 2.8e-12 75.1 49 73.5
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 1.1e-11 73.2 32 93.8
BolC7t43855H Brassica oleracea HOM05D001200 ORTHO05D009713 1.3e-09 66.2 38 76.3
BraSC138t45535Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-09 65.9 39 71.8
Hund03918 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.2e-09 65.5 43 69.8
Hund10653 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.5e-09 63.9 49 67.3
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-08 63.2 27 92.6
CsaV3_6G032290 Cucumis sativus L. HOM05D001200 ORTHO05D002731 2.7e-07 58.5 33 75.8
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 3.5e-07 58.2 30 83.3


User provided reference genes

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