Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G138500 Glycine max HOM05D000660 ORTHO05D003823 2.7e-29 131.3 68 100.0
Glyma.07G242000 Glycine max HOM05D000660 ORTHO05D003823 1.3e-23 112.5 65 89.2
Glyma.17G031900 Glycine max HOM05D000660 ORTHO05D003823 8.5e-23 109.8 65 87.7
VMungo1215G0416 Vigna mungo HOM05D000660 ORTHO05D003823 9.7e-19 96.3 65 75.4
Psat1g160720 Pisum sativum HOM05D000660 ORTHO05D003823 1.7e-18 95.5 65 75.4
Lj4g0003383 Lotus japonicus HOM05D000660 ORTHO05D003823 1.1e-17 92.8 65 73.8
TPR.G5767 Trifolium pratense HOM05D000660 ORTHO05D003823 1.4e-17 92.4 64 71.9
Ca_01875_v3 Cicer arietinum L. HOM05D000660 ORTHO05D003823 2.0e-16 88.6 64 71.9
Glyma.09G038300 Glycine max HOM05D000660 ORTHO05D003823 2.0e-16 88.6 62 75.8
Phvul.003G111900 Phaseolus vulgaris HOM05D000660 ORTHO05D003823 2.0e-16 88.6 65 67.7
Medtr2g034650 Medicago truncatula HOM05D000660 ORTHO05D003823 2.7e-16 88.2 64 70.3
Lalb_Chr18g0058851 Lupinus albus HOM05D000660 ORTHO05D003823 3.5e-16 87.8 64 68.8
Psat4g022280 Pisum sativum HOM05D000660 ORTHO05D003823 3.5e-16 87.8 65 69.2
arahy.Tifrunner.gnm1.ann1.AHLX63 Arachis hypogaea HOM05D000660 ORTHO05D003823 4.5e-16 87.4 62 71.0
arahy.Tifrunner.gnm1.ann1.UNJ3ZI Arachis hypogaea HOM05D000660 ORTHO05D003823 4.5e-16 87.4 62 71.0
Dinv44309 Davidia involucrata HOM05D000660 ORTHO05D003823 5.9e-16 87.0 65 67.7
TPR.G16847 Trifolium pratense HOM05D000660 ORTHO05D003823 7.7e-16 86.7 65 67.7
Psat4g022320 Pisum sativum HOM05D000660 ORTHO05D003823 1.3e-15 85.9 65 67.7
Lj6g0007586 Lotus japonicus HOM05D000660 ORTHO05D003823 1.7e-15 85.5 65 70.8
Medtr4g121840 Medicago truncatula HOM05D000660 ORTHO05D003823 1.7e-15 85.5 65 66.2
TAR589G0001 Trochodendron aralioides HOM05D000660 ORTHO05D003823 2.9e-15 84.7 65 63.1
Glyma.15G143400 Glycine max HOM05D000660 ORTHO05D003823 3.8e-15 84.3 62 71.0
Manes.03G202200 Manihot esculenta HOM05D000660 ORTHO05D003823 5.0e-15 84.0 62 67.7
Cpa.g.sc929.1 Carica papaya HOM05D000660 ORTHO05D003823 6.5e-15 83.6 65 66.2
CiPaw.01G141000 Carya illinoinensis HOM05D000660 ORTHO05D003823 6.5e-15 83.6 66 65.2
Migut.G00093 Erythranthe guttata HOM05D000660 ORTHO05D003823 6.5e-15 83.6 65 61.5
Lalb_Chr12g0200951 Lupinus albus HOM05D000660 ORTHO05D003823 6.5e-15 83.6 62 72.6
TAR633G0684 Trochodendron aralioides HOM05D000660 ORTHO05D003823 6.5e-15 83.6 65 63.1
Ca_21455_v3 Cicer arietinum L. HOM05D000660 ORTHO05D003823 8.5e-15 83.2 65 64.6
QL06p011538 Quercus lobata HOM05D000660 ORTHO05D003823 8.5e-15 83.2 65 67.7
Ciclev10004273m.g Citrus clementina HOM05D000660 ORTHO05D003823 1.1e-14 82.8 65 66.2
Sed0012995 Sechium edule HOM05D000660 ORTHO05D003823 1.1e-14 82.8 66 62.1
GSVIVG01035027001 Vitis vinifera HOM05D000660 ORTHO05D003823 1.1e-14 82.8 62 66.1
Actinidia13368 Actinidia chinensis HOM05D000660 ORTHO05D003823 1.5e-14 82.4 65 63.1
Sabra10G0109600 Salix brachista HOM05D000660 ORTHO05D003823 1.9e-14 82.0 65 64.6
CSS0035880 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 3.2e-14 81.3 65 63.1
Cc03_g01050 Coffea canephora HOM05D000660 ORTHO05D003823 3.2e-14 81.3 65 63.1
Lj3C829T5 Lonicera japonica HOM05D000660 ORTHO05D003823 3.2e-14 81.3 65 60.0
Phvul.009G254500 Phaseolus vulgaris HOM05D000660 ORTHO05D003823 4.2e-14 80.9 65 63.1
Sopen01g026290 Solanum pennellii HOM05D000660 ORTHO05D003823 4.2e-14 80.9 64 64.1
CANSAT78G1612 Cannabis sativa HOM05D000660 ORTHO05D003823 5.5e-14 80.5 65 63.1
SGA_v2.0_scaffold67G22570 Striga asiatica HOM05D000660 ORTHO05D003823 5.5e-14 80.5 62 61.3
Migut.N00052 Erythranthe guttata HOM05D000660 ORTHO05D003823 9.4e-14 79.7 65 58.5
TWI53G0835 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 9.4e-14 79.7 65 64.6
CAN.G197.10 Capsicum annuum HOM05D000660 ORTHO05D003823 1.2e-13 79.3 65 61.5
Thecc.04G296700 Theobroma cacao HOM05D000660 ORTHO05D003823 1.2e-13 79.3 65 63.1
Haze_01267 Corylus avellana HOM05D000660 ORTHO05D003823 1.6e-13 79.0 65 64.6
Peaxi162Scf00065g00120 Petunia axillaris HOM05D000660 ORTHO05D003823 1.6e-13 79.0 62 62.9
Solyc12g099340.3 Solanum lycopersicum HOM05D000660 ORTHO05D003823 1.6e-13 79.0 65 63.1
Sopen12g034010 Solanum pennellii HOM05D000660 ORTHO05D003823 1.6e-13 79.0 65 63.1
THA.LOC104802602 Tarenaya hassleriana HOM05D000660 ORTHO05D003823 1.6e-13 79.0 64 60.9
Aqoxy2G02782 Aquilegia oxysepala HOM05D000660 ORTHO05D003823 2.1e-13 78.6 60 70.0
Cfa015345 Carpinus fangiana HOM05D000660 ORTHO05D003823 2.1e-13 78.6 66 65.2
Potri.008G107900 Populus trichocarpa HOM05D000660 ORTHO05D003823 2.1e-13 78.6 65 61.5
Lalb_Chr13g0298381 Lupinus albus HOM05D000660 ORTHO05D003823 2.7e-13 78.2 64 62.5
Nitab4.5_0003294g0010 Nicotiana tabacum HOM05D000660 ORTHO05D003823 3.6e-13 77.8 65 61.5
TWI73G0500 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 3.6e-13 77.8 62 64.5
MSTRG.10139 Avicennia marina HOM05D000660 ORTHO05D003823 4.7e-13 77.4 66 63.6
PGSC0003DMG400004701 Solanum tuberosum HOM05D000660 ORTHO05D003823 4.7e-13 77.4 65 61.5
TWI09G1385 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 6.1e-13 77.0 65 61.5
arahy.Tifrunner.gnm1.ann1.70REMX Arachis hypogaea HOM05D000660 ORTHO05D003823 8.0e-13 76.6 62 64.5
PSO210G4000 Papaver somniferum HOM05D000660 ORTHO05D003823 8.0e-13 76.6 61 65.6
PSO761G0659 Papaver somniferum HOM05D000660 ORTHO05D003823 8.0e-13 76.6 61 65.6
Rhsim02G0005500 Rhododendron simsii HOM05D000660 ORTHO05D003823 8.0e-13 76.6 65 60.0
MSTRG.21779 Avicennia marina HOM05D000660 ORTHO05D003823 1.0e-12 76.3 65 58.5
CiPaw.02G076200 Carya illinoinensis HOM05D000660 ORTHO05D003823 1.0e-12 76.3 66 62.1
Oeu016483.1 Olea europaea HOM05D000660 ORTHO05D003823 1.0e-12 76.3 65 64.6
Prupe.1G122800 Prunus persica HOM05D000660 ORTHO05D003823 1.0e-12 76.3 65 63.1
SalBow8G3172 Salvia bowleyana HOM05D000660 ORTHO05D003823 1.0e-12 76.3 65 58.5
SalBow8G5344 Salvia bowleyana HOM05D000660 ORTHO05D003823 1.0e-12 76.3 65 58.5
TAR362G1226 Trochodendron aralioides HOM05D000660 ORTHO05D003823 1.4e-12 75.9 65 61.5
vmacro15192 Vaccinium macrocarpon HOM05D000660 ORTHO05D003823 1.4e-12 75.9 65 60.0
Actinidia40357 Actinidia chinensis HOM05D000660 ORTHO05D003823 1.8e-12 75.5 65 61.5
Gorai.005G065700 Gossypium raimondii HOM05D000660 ORTHO05D003823 1.8e-12 75.5 65 61.5
Potri.010G141700 Populus trichocarpa HOM05D000660 ORTHO05D003823 1.8e-12 75.5 65 60.0
Aa31LG10G5980 Aethionema arabicum HOM05D000660 ORTHO05D003823 2.3e-12 75.1 64 56.2
CAN.G484.56 Capsicum annuum HOM05D000660 ORTHO05D003823 2.3e-12 75.1 65 61.5
Rhsim04G0233600 Rhododendron simsii HOM05D000660 ORTHO05D003823 2.3e-12 75.1 65 61.5
arahy.Tifrunner.gnm1.ann1.GX0UVA Arachis hypogaea HOM05D000660 ORTHO05D003823 3.0e-12 74.7 62 62.9
COL.COLO4_34655 Corchorus olitorius HOM05D000660 ORTHO05D003823 3.0e-12 74.7 68 61.8
MD16G1157900 Malus domestica HOM05D000660 ORTHO05D003823 3.0e-12 74.7 66 60.6
Nitab4.5_0001305g0010 Nicotiana tabacum HOM05D000660 ORTHO05D003823 3.0e-12 74.7 65 60.0
Dinv15197 Davidia involucrata HOM05D000660 ORTHO05D003823 4.0e-12 74.3 68 58.8
Gohir.A02G053500 Gossypium hirsutum HOM05D000660 ORTHO05D003823 4.0e-12 74.3 65 61.5
Gorai.006G079000 Gossypium raimondii HOM05D000660 ORTHO05D003823 4.0e-12 74.3 65 60.0
Oeu029004.1 Olea europaea HOM05D000660 ORTHO05D003823 4.0e-12 74.3 65 58.5
Oeu036983.1 Olea europaea HOM05D000660 ORTHO05D003823 4.0e-12 74.3 65 56.9
Atru.chr4.2977 Acer truncatum HOM05D000660 ORTHO05D003823 5.2e-12 73.9 65 58.5
CSS0001347 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 5.2e-12 73.9 65 58.5
CSS0036186 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 5.2e-12 73.9 65 58.5
Duzib151G1194 Durio zibethinus HOM05D000660 ORTHO05D003823 5.2e-12 73.9 65 61.5
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 5.2e-12 73.9 62 62.9
Psat4g022400 Pisum sativum HOM05D000660 ORTHO05D003823 6.8e-12 73.6 61 62.3
Sabra08G0081600 Salix brachista HOM05D000660 ORTHO05D003823 6.8e-12 73.6 65 58.5
vmacro08067 Vaccinium macrocarpon HOM05D000660 ORTHO05D003823 6.8e-12 73.6 65 58.5
Sp7g14650 Schrenkiella parvula HOM05D000660 ORTHO05D003823 8.8e-12 73.2 66 59.1
ClCG06G004700 Citrullus lanatus HOM05D000660 ORTHO05D003823 1.2e-11 72.8 65 56.9
Gohir.D02G058200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 1.2e-11 72.8 65 60.0
Gohir.D09G064200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 1.2e-11 72.8 65 58.5
AUR62016135 Chenopodium quinoa HOM05D000660 ORTHO05D003823 1.5e-11 72.4 64 54.7
Carub.0007s2541 Capsella rubella HOM05D000660 ORTHO05D003823 2.0e-11 72.0 66 57.6
CARHR222510 Cardamine hirsuta HOM05D000660 ORTHO05D003823 2.0e-11 72.0 64 59.4
FvH4_4g19400 Fragaria vesca HOM05D000660 ORTHO05D003823 2.0e-11 72.0 65 58.5
FAN12G0613 Fragaria x ananassa HOM05D000660 ORTHO05D003823 2.0e-11 72.0 65 58.5
FAN12G4342 Fragaria x ananassa HOM05D000660 ORTHO05D003823 2.0e-11 72.0 65 58.5
Lj6C688T9 Lonicera japonica HOM05D000660 ORTHO05D003823 2.0e-11 72.0 65 55.4
BcaB04g18367 Brassica carinata HOM05D000660 ORTHO05D003823 2.6e-11 71.6 70 58.6
A08p12400 Brassica napus HOM05D000660 ORTHO05D003823 2.6e-11 71.6 66 57.6
BolC8t48338H Brassica oleracea HOM05D000660 ORTHO05D003823 2.6e-11 71.6 66 57.6
BolC8t48342H Brassica oleracea HOM05D000660 ORTHO05D003823 2.6e-11 71.6 66 57.6
BraA08t33216Z Brassica rapa HOM05D000660 ORTHO05D003823 2.6e-11 71.6 66 57.6
FAN07G0370 Fragaria x ananassa HOM05D000660 ORTHO05D003823 2.6e-11 71.6 65 58.5
HanXRQChr01g0029901 Helianthus annuus HOM05D000660 ORTHO05D003823 2.6e-11 71.6 71 57.7
Nn3g21665 Nelumbo nucifera HOM05D000660 ORTHO05D003823 2.6e-11 71.6 60 65.0
RcHm_v2.0_Chr4g0424431 Rosa chinensis HOM05D000660 ORTHO05D003823 2.6e-11 71.6 68 58.8
Gohir.A09G065200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 3.4e-11 71.2 65 56.9
AUR62041410 Chenopodium quinoa HOM05D000660 ORTHO05D003823 4.4e-11 70.9 64 53.1
BcaC07g37956 Brassica carinata HOM05D000660 ORTHO05D003823 5.7e-11 70.5 66 57.6
Duzib212G0471 Durio zibethinus HOM05D000660 ORTHO05D003823 5.7e-11 70.5 65 55.4
Gohir.D10G177800 Gossypium hirsutum HOM05D000660 ORTHO05D003823 5.7e-11 70.5 62 58.1
Gorai.011G198600 Gossypium raimondii HOM05D000660 ORTHO05D003823 5.7e-11 70.5 62 58.1
Gohir.A10G170700 Gossypium hirsutum HOM05D000660 ORTHO05D003823 7.5e-11 70.1 68 55.9
AL7G38970 Arabidopsis lyrata HOM05D000660 ORTHO05D003823 1.3e-10 69.3 66 56.1
Thhalv10024342m.g Eutrema salsugineum HOM05D000660 ORTHO05D003823 1.3e-10 69.3 70 55.7
Lsat_1_v5_gn_1_43941 Lactuca sativa HOM05D000660 ORTHO05D003823 1.3e-10 69.3 71 54.9
Haze_01065 Corylus avellana HOM05D000660 ORTHO05D003823 1.7e-10 68.9 62 62.9
Cfa015489 Carpinus fangiana HOM05D000660 ORTHO05D003823 2.2e-10 68.6 64 59.4
CsaV3_6G022470 Cucumis sativus L. HOM05D000660 ORTHO05D003823 2.2e-10 68.6 65 55.4
Nn4g25624 Nelumbo nucifera HOM05D000660 ORTHO05D003823 2.2e-10 68.6 60 61.7
EL10Ac3g05455 Beta vulgaris HOM05D000660 ORTHO05D003823 2.8e-10 68.2 65 52.3
PGR031G0095 Punica granatum HOM05D000660 ORTHO05D003823 3.7e-10 67.8 70 55.7
Hund03107 Selenicereus undatus HOM05D000660 ORTHO05D003823 8.3e-10 66.6 65 55.4
Ah.13g072050 Amaranthus hybridus HOM05D000660 ORTHO05D003823 1.1e-09 66.2 65 55.4
MELO3C021280.2 Cucumis melo HOM05D000660 ORTHO05D003823 1.4e-09 65.9 65 52.3
ECA248G0336 Erigeron canadensis HOM05D000660 ORTHO05D003823 1.4e-09 65.9 71 54.9
unitig_88.g27706 Utricularia gibba HOM05D000660 ORTHO05D003823 1.4e-09 65.9 60 53.3
Carub.0003s1669 Capsella rubella HOM05D000660 ORTHO05D003823 3.1e-09 64.7 62 54.8
MBI19_g24816_MAGBIO Magnolia biondii HOM05D000660 ORTHO05D003823 3.1e-09 64.7 60 56.7
HanXRQChr05g0148191 Helianthus annuus HOM05D000660 ORTHO05D003823 4.1e-09 64.3 68 55.9
Aa31LG8G4000 Aethionema arabicum HOM05D000660 ORTHO05D003823 5.4e-09 63.9 65 47.7
BcaC05g28839 Brassica carinata HOM05D000660 ORTHO05D003823 5.4e-09 63.9 65 53.8
A05p32730 Brassica napus HOM05D000660 ORTHO05D003823 5.4e-09 63.9 65 53.8
C05p49450 Brassica napus HOM05D000660 ORTHO05D003823 5.4e-09 63.9 65 53.8
BolC5t33692H Brassica oleracea HOM05D000660 ORTHO05D003823 5.4e-09 63.9 65 53.8
BraA05t22095Z Brassica rapa HOM05D000660 ORTHO05D003823 5.4e-09 63.9 65 53.8
Lsat_1_v5_gn_6_114260 Lactuca sativa HOM05D000660 ORTHO05D003823 7.0e-09 63.5 69 53.6
Sc13g0006390 Simmondsia chinensis HOM05D000660 ORTHO05D003823 1.2e-08 62.8 66 53.0
AL3G29920 Arabidopsis lyrata HOM05D000660 ORTHO05D003823 1.6e-08 62.4 62 53.2
Ah.04g154750 Amaranthus hybridus HOM05D000660 ORTHO05D003823 2.0e-08 62.0 65 53.8
BcaB06g25786 Brassica carinata HOM05D000660 ORTHO05D003823 2.0e-08 62.0 66 51.5
ECA246G5148 Erigeron canadensis HOM05D000660 ORTHO05D003823 2.0e-08 62.0 70 52.9
PGR004G1371 Punica granatum HOM05D000660 ORTHO05D003823 2.7e-08 61.6 63 55.6
AT3G16940 Arabidopsis thaliana HOM05D000660 ORTHO05D003823 3.5e-08 61.2 62 51.6
SGA_v2.0_scaffold264G46038 Striga asiatica HOM05D000660 ORTHO05D003823 5.9e-08 60.5 61 54.1
Thhalv10020047m.g Eutrema salsugineum HOM05D000660 ORTHO05D003823 7.7e-08 60.1 62 53.2
Hund11955 Selenicereus undatus HOM05D000660 ORTHO05D003823 7.7e-08 60.1 62 53.2
CDE02G4595 Ceratophyllum demersum HOM05D000660 ORTHO05D003823 1.3e-07 59.3 58 53.4
Sp3g15170 Schrenkiella parvula HOM05D000660 ORTHO05D003823 3.8e-07 57.8 62 48.4
CARHR092210 Cardamine hirsuta HOM05D000660 ORTHO05D003823 5.0e-07 57.4 63 50.8
Hund03105 Selenicereus undatus HOM05D000660 ORTHO05D003823 2.5e-06 55.1 63 49.2


User provided reference genes

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