Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 3.7e-171 605.1 392 100.0
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 2.3e-152 542.7 392 84.7
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 3.0e-152 542.3 392 87.5
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 1.1e-149 533.9 382 83.0
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 9.9e-140 500.7 403 77.9
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 3.5e-137 492.3 274 92.0
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 6.6e-136 488.0 323 81.7
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 1.2e-132 477.2 296 84.5
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 6.4e-131 471.5 316 82.0
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 1.2e-129 467.2 293 83.3
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 3.0e-128 462.6 312 79.2
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 3.0e-128 462.6 293 82.9
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.5e-127 460.3 293 82.3
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 2.5e-127 459.5 290 83.1
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 5.6e-127 458.4 294 82.3
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 1.3e-126 457.2 293 82.3
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 4.8e-126 455.3 290 82.4
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 1.4e-125 453.8 313 76.4
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 3.1e-125 452.6 292 79.1
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 5.3e-125 451.8 293 80.2
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 5.3e-125 451.8 292 79.5
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 9.0e-125 451.1 319 74.3
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 2.6e-124 449.5 268 88.1
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.6e-124 449.5 278 84.2
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 3.4e-124 449.1 301 79.1
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 5.8e-124 448.4 319 74.0
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 9.9e-124 447.6 351 70.7
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 1.3e-123 447.2 319 74.0
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 1.3e-123 447.2 289 80.3
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 3.8e-123 445.7 319 77.4
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 3.8e-123 445.7 299 77.3
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 4.9e-123 445.3 294 77.9
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 6.4e-123 444.9 295 78.6
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 2.4e-122 443.0 289 82.0
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 2.4e-122 443.0 289 82.0
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 3.2e-122 442.6 291 80.4
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 7.1e-122 441.4 287 80.1
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.2e-121 440.7 276 81.5
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 1.2e-121 440.7 318 73.9
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 2.1e-121 439.9 293 78.2
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 2.7e-121 439.5 311 74.3
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 7.9e-121 438.0 298 76.2
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.0e-120 437.6 316 77.2
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 3.0e-120 436.0 291 78.7
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 5.1e-120 435.3 265 83.8
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 1.5e-119 433.7 291 78.4
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 3.3e-119 432.6 270 83.0
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 7.4e-119 431.4 272 83.1
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 7.4e-119 431.4 272 83.1
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 1.3e-118 430.6 276 80.4
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 8.1e-118 427.9 265 82.3
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 1.8e-117 426.8 270 81.1
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 2.4e-117 426.4 270 81.5
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 4.0e-117 425.6 270 81.1
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 4.0e-117 425.6 388 68.0
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 6.9e-117 424.9 291 78.7
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 6.9e-117 424.9 290 76.2
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 9.0e-117 424.5 306 74.8
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 2.6e-116 422.9 293 75.1
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 3.4e-116 422.5 387 68.0
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 4.5e-116 422.2 317 71.3
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 1.7e-115 420.2 295 75.6
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.5e-115 418.3 320 70.9
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 3.2e-114 416.0 285 74.4
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 5.5e-114 415.2 291 73.5
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 5.5e-114 415.2 270 79.6
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 1.6e-113 413.7 291 74.9
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.6e-113 413.7 290 75.9
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.6e-113 413.7 290 75.9
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 2.1e-113 413.3 291 74.6
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 2.7e-113 412.9 288 75.0
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 3.5e-113 412.5 290 74.1
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 4.6e-113 412.1 291 74.6
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 4.6e-113 412.1 297 74.1
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 1.0e-112 411.0 291 74.6
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 1.0e-112 411.0 291 74.6
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 1.0e-112 411.0 316 72.2
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 1.3e-112 410.6 291 74.2
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 2.3e-112 409.8 270 78.5
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 3.0e-112 409.5 265 80.0
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 6.7e-112 408.3 323 71.2
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 8.7e-112 407.9 369 63.1
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 2.5e-111 406.4 270 79.6
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 3.3e-111 406.0 271 76.0
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.6e-110 403.7 389 66.6
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 4.1e-109 399.1 291 73.2
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 4.1e-109 399.1 288 73.6
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 5.3e-109 398.7 279 73.1
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 2.0e-108 396.7 388 62.4
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 2.6e-108 396.4 300 72.0
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 5.0e-107 392.1 321 67.9
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-106 391.0 300 71.7
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 8.7e-104 381.3 289 71.3
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 3.3e-103 379.4 289 70.2
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 7.4e-103 378.3 267 76.0
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.3e-102 375.2 239 80.8
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 1.8e-101 373.6 240 79.2
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.0e-99 367.9 239 80.3
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 7.2e-98 361.7 268 66.8
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 2.7e-97 359.8 292 64.4
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 5.7e-95 352.1 283 65.0
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 5.5e-90 335.5 268 64.6
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.8e-88 330.5 222 78.8
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 1.8e-88 330.5 275 62.2
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 5.7e-87 325.5 251 66.5
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 1.1e-85 321.2 293 61.4
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 1.3e-83 314.3 266 65.4
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.7e-83 313.9 287 58.9
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.7e-83 313.9 287 58.9
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 2.7e-81 306.6 206 76.7
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 7.5e-79 298.5 266 57.1
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 2.8e-78 296.6 267 55.1
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 4.8e-78 295.8 266 55.3
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 9.8e-71 271.6 311 55.3
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.6e-68 264.2 247 62.3
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.3e-67 261.2 171 75.4
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.9e-66 257.3 168 82.1
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.7e-65 252.7 177 73.4
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 3.0e-51 206.8 156 62.8
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.9e-45 187.6 122 76.2
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.6e-44 183.0 126 73.0
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.8e-30 136.7 106 73.6
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 1.2e-28 131.7 92 69.6
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.9e-26 124.4 102 55.9
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 2.5e-18 97.4 240 31.7
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 4.3e-18 96.7 62 71.0
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 5.6e-18 96.3 293 28.7
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 2.8e-17 94.0 102 58.8
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 7.6e-15 85.9 112 42.9
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 2.2e-06 57.8 38 68.4


User provided reference genes

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