Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 2.1e-275 951.8 499 100.0
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 4.5e-246 854.4 500 90.4
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.5e-238 827.8 503 86.5
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 4.4e-225 784.6 499 83.2
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.3e-184 650.2 499 68.1
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 1.9e-183 646.4 499 68.7
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 4.1e-183 645.2 499 69.5
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 9.2e-183 644.0 499 69.5
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.0e-181 640.6 499 68.3
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 1.6e-179 633.3 499 66.7
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 2.1e-179 632.9 499 67.9
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 1.4e-178 630.2 499 66.9
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.1e-175 620.5 499 65.5
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.1e-175 620.5 499 66.1
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.2e-174 617.1 499 65.7
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.1e-174 616.3 499 66.7
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 5.1e-173 611.7 500 66.2
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 5.1e-173 611.7 500 66.2
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 8.6e-173 610.9 463 68.9
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.9e-172 609.8 499 65.3
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 3.3e-172 609.0 499 66.9
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.6e-171 606.7 499 64.9
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 2.8e-171 605.9 499 64.3
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.8e-171 605.9 499 64.7
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 1.8e-170 603.2 451 68.7
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 5.2e-170 601.7 499 64.3
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 2.4e-167 592.8 499 63.7
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 3.2e-167 592.4 465 66.0
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 1.0e-165 587.4 499 63.3
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 1.0e-165 587.4 499 62.5
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.3e-165 587.0 499 63.7
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 3.9e-165 585.5 499 63.1
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 1.5e-164 583.6 465 65.2
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 9.6e-164 580.9 499 61.5
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 2.1e-163 579.7 463 64.1
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.8e-163 578.6 465 65.4
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 4.8e-163 578.6 495 62.0
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 8.1e-163 577.8 465 64.1
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.1e-162 577.4 498 61.8
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.8e-162 576.6 465 64.5
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 2.4e-162 576.2 471 65.2
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.4e-162 576.2 463 65.2
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 4.0e-162 575.5 427 68.9
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 9.0e-162 574.3 468 64.3
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 2.0e-161 573.2 465 65.4
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 2.6e-161 572.8 470 63.4
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 3.4e-161 572.4 512 60.5
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.8e-160 568.9 463 63.9
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 3.8e-160 568.9 463 64.1
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 6.4e-160 568.2 461 64.0
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 8.4e-160 567.8 427 67.9
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.9e-159 566.6 463 63.9
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.9e-159 566.6 465 62.8
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 2.4e-159 566.2 464 63.6
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 4.2e-159 565.5 470 61.7
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 2.1e-158 563.1 468 63.7
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 4.6e-158 562.0 464 63.4
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.0e-157 560.8 465 62.6
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.0e-157 560.8 471 62.0
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.0e-157 559.3 465 62.4
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 3.0e-157 559.3 464 63.1
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 8.7e-157 557.8 466 63.7
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.5e-156 557.0 499 59.7
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.9e-156 556.6 465 62.2
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 3.3e-156 555.8 500 60.6
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 5.6e-156 555.1 480 61.0
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.3e-155 553.9 465 61.7
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.6e-155 553.5 465 61.9
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.8e-155 552.7 464 62.9
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.8e-155 552.7 499 60.1
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.1e-154 549.3 499 59.5
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 9.0e-154 547.7 464 62.9
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 2.2e-152 543.1 470 61.1
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 2.9e-152 542.7 500 58.8
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 8.4e-152 541.2 470 61.1
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.9e-151 540.0 463 62.4
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 4.2e-151 538.9 480 60.2
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.2e-150 537.3 470 60.6
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.5e-150 535.8 514 56.4
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.5e-150 535.8 480 59.8
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.1e-148 530.8 469 60.1
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 2.8e-147 526.2 466 60.3
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 6.2e-147 525.0 461 60.1
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 6.2e-147 525.0 469 60.1
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.5e-145 520.4 497 57.1
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 7.6e-145 518.1 500 56.8
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 4.9e-144 515.4 464 59.3
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 6.5e-144 515.0 499 55.7
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 8.4e-144 514.6 468 57.5
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 5.5e-143 511.9 462 57.4
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 6.0e-142 508.4 499 54.9
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.0e-141 506.1 499 55.3
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 1.1e-140 504.2 455 58.9
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.9e-140 503.4 501 55.9
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 4.3e-140 502.3 509 55.6
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 7.4e-140 501.5 467 57.0
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 7.4e-140 501.5 499 55.5
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.3e-139 500.7 493 58.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.6e-139 500.4 499 54.9
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 2.1e-139 500.0 499 54.9
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 8.2e-139 498.0 504 55.8
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 8.2e-139 498.0 504 55.8
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 8.2e-139 498.0 504 55.8
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.3e-136 490.7 499 54.9
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.3e-136 490.7 499 54.5
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 5.0e-136 488.8 468 56.6
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 1.9e-135 486.9 499 54.7
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.3e-133 479.9 420 58.3
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 5.7e-132 475.3 474 54.6
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 6.3e-131 471.9 463 55.7
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.0e-128 464.5 465 55.1
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.2e-128 463.4 463 56.2
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 2.9e-128 463.0 463 55.9
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 9.4e-127 458.0 463 55.1
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 5.1e-125 452.2 412 57.8
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 6.7e-125 451.8 458 53.9
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.4e-121 439.5 463 54.9
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 6.5e-120 435.3 468 50.9
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 2.5e-119 433.3 465 53.8
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.2e-119 433.0 480 51.2
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 1.6e-118 430.6 467 50.1
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.4e-117 427.6 458 50.7
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.0e-112 411.4 458 49.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.0e-112 411.4 458 49.8
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.5e-111 407.5 458 49.3
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 9.7e-108 394.8 298 67.4
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 4.5e-105 386.0 461 49.2
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 1.9e-103 380.6 466 47.4
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.8e-101 371.7 317 62.5
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.8e-101 371.7 317 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 4.8e-99 365.9 463 45.4
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.6e-97 360.9 467 43.3
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.8e-93 347.4 378 50.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 2.0e-92 344.0 316 57.0
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.5e-89 333.2 429 43.8
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.3e-80 303.9 458 38.9
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.7e-78 296.2 265 60.4
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 6.8e-77 292.4 231 69.3
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.0e-72 278.5 320 52.8
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 4.3e-71 273.1 412 41.5
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 8.3e-67 258.8 234 56.8
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.9e-66 257.7 200 67.5
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 6.8e-61 239.2 362 39.5
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.6e-54 218.0 187 59.4
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 2.4e-53 214.2 456 34.9
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 4.0e-45 186.8 146 58.2
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 4.9e-43 179.9 420 31.4
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.2e-42 177.2 157 60.5
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.2e-42 177.2 157 60.5
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 8.7e-24 115.9 93 55.9
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.5e-18 97.8 87 62.1
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.6e-09 67.0 54 57.4


User provided reference genes

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