Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.4e-44 181.8 92 100.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.4e-44 181.8 92 100.0
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 3.3e-38 161.4 88 94.3
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.0e-34 149.8 88 85.2
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.7e-34 149.1 94 84.0
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 5.0e-34 147.5 90 85.6
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 5.0e-34 147.5 94 83.0
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.0e-34 147.5 84 88.1
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 8.5e-34 146.7 89 83.1
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.5e-33 146.0 90 83.3
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.5e-33 146.0 87 85.1
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.9e-33 145.6 87 86.2
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.9e-33 145.6 87 86.2
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.5e-33 145.2 93 82.8
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 2.5e-33 145.2 85 85.9
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.2e-33 144.8 90 83.3
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.2e-33 144.8 92 78.3
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 4.2e-33 144.4 87 85.1
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 4.2e-33 144.4 89 82.0
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 4.2e-33 144.4 87 83.9
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 5.5e-33 144.1 91 80.2
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 5.5e-33 144.1 89 83.1
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 5.5e-33 144.1 90 82.2
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 7.2e-33 143.7 87 83.9
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 9.4e-33 143.3 87 83.9
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 9.4e-33 143.3 88 81.8
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.2e-32 142.9 87 82.8
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.6e-32 142.5 89 80.9
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 2.7e-32 141.7 89 80.9
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.7e-32 141.7 82 84.1
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.7e-32 141.7 89 78.7
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 2.7e-32 141.7 81 92.6
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 3.6e-32 141.4 87 82.8
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 4.7e-32 141.0 87 83.9
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 4.7e-32 141.0 87 81.6
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 6.1e-32 140.6 89 77.5
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 8.0e-32 140.2 87 80.5
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.8e-31 139.0 86 80.2
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.0e-31 138.3 87 81.6
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.0e-31 138.3 89 79.8
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 4.0e-31 137.9 85 80.0
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 5.2e-31 137.5 89 77.5
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 5.2e-31 137.5 85 77.6
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.2e-31 137.5 89 76.4
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.2e-30 136.3 80 83.8
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.2e-30 136.3 83 80.7
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.5e-30 136.0 89 80.9
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.0e-30 135.6 90 75.6
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.0e-30 135.6 87 75.9
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.6e-30 135.2 85 77.6
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 2.6e-30 135.2 89 75.3
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.4e-30 134.4 87 75.9
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 4.4e-30 134.4 86 77.9
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.7e-30 134.0 87 80.5
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 7.5e-30 133.7 81 80.2
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 7.5e-30 133.7 78 85.9
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 9.7e-30 133.3 82 78.0
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 9.7e-30 133.3 87 78.2
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 9.7e-30 133.3 87 78.2
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 2.2e-29 132.1 80 82.5
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.2e-29 132.1 89 75.3
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 2.8e-29 131.7 89 73.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.8e-29 131.7 94 74.5
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.8e-29 131.7 87 75.9
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.7e-29 131.3 86 73.3
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 3.7e-29 131.3 87 77.0
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.7e-29 131.3 82 79.3
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 4.8e-29 131.0 81 85.2
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 4.8e-29 131.0 82 79.3
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 4.8e-29 131.0 80 81.2
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 4.8e-29 131.0 80 81.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 4.8e-29 131.0 80 81.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 6.3e-29 130.6 89 73.0
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 8.2e-29 130.2 81 84.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 8.2e-29 130.2 81 77.8
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 8.2e-29 130.2 92 77.2
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.1e-28 129.8 73 91.8
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.4e-28 128.6 86 73.3
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 2.4e-28 128.6 80 80.0
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.4e-28 128.6 81 84.0
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.4e-28 128.6 81 84.0
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.4e-28 128.6 81 84.0
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 4.1e-28 127.9 76 84.2
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 7.0e-28 127.1 81 76.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 7.0e-28 127.1 81 76.5
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 7.0e-28 127.1 79 78.5
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 9.1e-28 126.7 85 81.2
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.6e-27 125.9 81 75.3
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.0e-27 125.6 81 75.3
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.0e-27 125.6 81 75.3
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.0e-27 125.6 81 75.3
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 2.0e-27 125.6 81 74.1
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 2.0e-27 125.6 87 72.4
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.7e-27 125.2 80 87.5
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 3.5e-27 124.8 81 74.1
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 4.5e-27 124.4 81 75.3
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 4.5e-27 124.4 81 72.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.5e-27 124.4 81 76.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 4.5e-27 124.4 78 80.8
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 5.9e-27 124.0 86 73.3
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 5.9e-27 124.0 81 74.1
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 7.7e-27 123.6 81 74.1
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.0e-26 123.2 81 80.2
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.0e-26 123.2 82 70.7
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.0e-26 123.2 82 70.7
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.0e-26 123.2 82 70.7
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.0e-26 123.2 81 72.8
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.3e-26 122.9 81 80.2
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.7e-26 122.5 81 74.1
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 1.7e-26 122.5 90 66.7
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-26 122.5 90 66.7
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-26 122.5 90 66.7
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-26 122.5 90 66.7
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 2.9e-26 121.7 74 86.5
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.9e-26 121.7 80 73.8
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 6.5e-26 120.6 81 72.8
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 8.5e-26 120.2 81 79.0
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 8.5e-26 120.2 95 71.6
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.5e-25 119.4 81 72.8
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.5e-25 117.5 88 71.6
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 7.2e-25 117.1 88 69.3
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 9.4e-25 116.7 84 73.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.6e-24 115.9 85 67.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.6e-24 115.9 85 67.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.6e-24 115.9 85 67.1
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.1e-24 115.5 88 70.5
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.7e-24 115.2 76 76.3
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 8.0e-24 113.6 74 78.4
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 3.0e-23 111.7 83 65.1
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.8e-21 105.1 83 71.1
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 3.1e-20 101.7 78 65.4
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 2.7e-19 98.6 79 62.0
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 5.9e-19 97.4 73 71.2
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 7.7e-19 97.1 57 80.7
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 8.5e-18 93.6 78 64.1
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.6e-16 89.4 77 61.0
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 8.0e-16 87.0 81 58.0
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.8e-15 85.9 78 61.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.5e-14 82.8 57 70.2
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.7e-13 79.3 52 75.0
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.7e-13 79.3 52 75.0
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.2e-13 79.0 48 77.1
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.1e-12 76.6 40 97.5
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 4.1e-12 74.7 51 70.6
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 5.4e-12 74.3 81 46.9


User provided reference genes

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