Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1574.3 1043 100.0
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1478.0 1039 95.4
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 0.0e+00 1411.4 1041 92.6
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 0.0e+00 1399.0 1046 91.5
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 0.0e+00 1234.2 1042 84.7
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1226.1 1048 83.2
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 0.0e+00 1226.1 1048 83.2
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 0.0e+00 1217.6 1047 82.5
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1214.9 1041 81.8
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 0.0e+00 1181.8 1047 81.7
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 0.0e+00 1181.4 1050 81.5
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 0.0e+00 1176.0 1047 81.4
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 0.0e+00 1156.7 1047 81.8
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1126.7 1041 78.7
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1122.1 1043 79.6
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 0.0e+00 1112.4 1043 79.1
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 0.0e+00 1077.8 1043 76.6
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 3.0e-308 1062.0 1065 74.3
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 3.7e-303 1045.0 1049 75.5
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 4.1e-302 1041.6 1046 75.0
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 2.3e-300 1035.8 1109 72.0
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 2.8e-298 1028.9 1080 72.2
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 4.9e-295 1018.1 1111 70.7
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 1.1e-294 1016.9 912 83.4
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 2.4e-294 1015.8 1058 73.3
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 2.3e-292 1009.2 1056 73.0
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 8.7e-292 1007.3 1053 73.3
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 3.3e-291 1005.4 1108 70.4
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 3.3e-291 1005.4 1107 70.9
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 7.3e-291 1004.2 1102 70.7
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 9.6e-291 1003.8 1064 72.7
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 2.8e-290 1002.3 1088 71.7
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 8.1e-290 1000.7 1101 70.7
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 3.4e-288 995.3 1048 73.6
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 7.6e-288 994.2 1048 73.2
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 7.6e-288 994.2 1045 73.7
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 9.9e-288 993.8 1112 70.0
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.3e-287 993.4 1127 69.3
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 2.9e-287 992.3 1053 72.8
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 6.4e-287 991.1 1053 61.9
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 5.4e-286 988.0 1112 69.9
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 7.1e-286 987.6 1042 72.9
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 9.3e-286 987.3 1112 69.8
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.2e-285 986.9 1048 73.0
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.7e-285 985.7 1069 71.7
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 8.7e-284 980.7 1108 69.2
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 9.6e-283 977.2 1053 72.2
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 1.3e-282 976.9 1109 69.4
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 6.2e-282 974.5 1077 70.5
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.1e-281 973.8 1077 70.4
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 7.6e-280 967.6 1104 68.9
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 2.1e-277 959.5 1051 71.5
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.6e-277 958.4 1071 70.2
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 1.3e-276 956.8 1079 69.0
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 2.3e-276 956.1 1045 71.9
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 3.9e-276 955.3 1048 72.3
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.3e-275 951.8 1071 70.1
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 1.1e-273 947.2 1044 71.6
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 2.4e-273 946.0 1049 71.4
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 1.1e-270 937.2 1112 68.3
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 7.9e-269 931.0 1051 69.3
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 3.0e-268 929.1 1039 71.2
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 1.1e-265 920.6 1048 70.7
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 4.0e-265 918.7 1062 67.3
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 6.9e-265 917.9 1047 70.7
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 9.0e-265 917.5 1068 64.0
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 1.3e-263 913.7 1045 70.4
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 1.4e-262 910.2 1049 69.1
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 5.5e-262 908.3 1043 69.1
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 2.7e-261 906.0 1077 67.7
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 7.9e-261 904.4 1087 66.0
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 5.1e-260 901.7 1080 65.8
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.9e-259 899.8 1071 66.4
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.9e-259 899.8 1218 45.4
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 1.6e-258 896.7 1063 65.9
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.8e-257 893.3 1047 66.4
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 2.2e-255 886.3 1051 63.4
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 2.9e-255 885.9 1060 68.7
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 1.1e-254 884.0 1083 65.7
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.1e-254 884.0 1065 67.2
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.6e-253 880.2 1138 45.6
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.8e-250 869.4 1056 67.1
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 4.1e-249 865.5 1053 66.9
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 5.3e-249 865.1 1064 65.2
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 1.3e-247 860.5 1058 68.8
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.4e-246 857.1 1039 68.6
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 1.4e-246 857.1 1039 67.0
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.4e-244 850.5 493 83.2
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.7e-242 843.6 1038 66.0
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 3.1e-241 839.3 1068 63.6
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 8.0e-237 824.7 486 80.0
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 7.7e-232 808.1 489 76.9
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 1.5e-227 793.9 918 73.0
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 2.4e-225 786.6 488 76.0
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 1.6e-224 783.9 985 62.6
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.2e-216 757.7 824 64.7
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.1e-214 751.1 1040 58.4
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 6.8e-212 741.9 1035 54.6
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 3.3e-206 723.0 484 70.0
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 1.2e-195 688.0 1035 60.3
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 8.3e-194 681.8 778 80.2
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 8.9e-180 635.2 480 63.3
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 4.4e-179 632.9 975 56.9
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 2.9e-178 630.2 921 64.8
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.6e-163 580.5 839 68.5
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 7.9e-144 515.8 1025 45.6
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.4e-135 488.4 440 58.0
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 1.4e-135 488.4 1032 46.9
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 7.7e-131 472.6 254 88.2
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 5.4e-100 370.2 539 39.1
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 3.4e-94 350.9 891 35.7
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 1.4e-92 345.5 205 75.6
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 5.9e-91 340.1 203 77.8
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 5.9e-91 340.1 705 58.4
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.2e-86 325.9 338 57.1
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 9.5e-81 306.2 346 51.4
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 2.0e-70 271.9 453 37.5
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.4e-70 271.2 376 46.3
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 3.5e-67 261.2 173 72.8
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 6.2e-64 250.4 266 53.0
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 4.0e-63 247.7 889 30.1
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 7.1e-60 236.9 197 68.5
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 3.6e-56 224.6 299 48.8
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 3.6e-48 198.0 133 66.2
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 5.3e-47 194.1 174 59.2
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 1.6e-43 182.6 183 54.1
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 3.0e-42 178.3 99 78.8
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 3.1e-39 168.3 125 63.2
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 5.3e-39 167.5 125 63.2
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 1.5e-38 166.0 123 70.7
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.7e-37 162.5 88 86.4
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.1e-33 149.8 88 78.4
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 7.4e-33 147.1 112 71.4
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.8e-31 142.5 75 80.0
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 8.5e-29 133.7 94 67.0
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 2.3e-26 125.6 105 64.8
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 1.9e-25 122.5 75 74.7
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 7.9e-19 100.5 125 43.2
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 4.5e-14 84.7 117 41.9
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 4.5e-14 84.7 333 26.1
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.1e-11 75.9 43 83.7
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 3.3e-09 68.6 49 57.1
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.4e-07 62.4 40 70.0
CSS0029353 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.9e-06 57.8 83 43.4
arahy.Tifrunner.gnm1.ann1.48QRQ3 Arachis hypogaea HOM05D002189 ORTHO05D002233 7.7e-06 57.4 36 77.8


User provided reference genes

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