Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 2.0e-230 802.0 377 100.0
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 2.0e-206 722.2 373 88.7
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.3e-197 693.0 376 84.6
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.5e-193 679.5 376 84.3
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.5e-193 679.5 375 83.7
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 5.7e-193 677.6 376 84.0
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 2.2e-192 675.6 374 84.8
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 4.5e-190 667.9 369 84.3
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.4e-188 662.9 375 82.9
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 3.2e-188 661.8 376 81.4
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 4.2e-188 661.4 375 82.1
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 5.1e-186 654.4 384 79.9
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 4.8e-184 647.9 373 78.8
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 5.3e-183 644.4 373 77.2
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 7.0e-183 644.0 374 77.3
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 9.1e-183 643.7 374 78.6
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.5e-182 642.9 374 77.3
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 2.0e-182 642.5 374 79.1
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 2.0e-182 642.5 379 78.4
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.0e-181 640.2 372 78.2
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.0e-181 640.2 375 78.4
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 5.0e-181 637.9 374 77.0
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 5.0e-181 637.9 374 78.6
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 5.0e-181 637.9 372 78.2
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.5e-181 637.5 374 78.6
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.1e-180 636.7 374 78.1
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.5e-180 636.3 374 77.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 1.5e-180 636.3 373 76.7
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.9e-180 636.0 374 78.3
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 4.2e-180 634.8 374 77.5
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 4.2e-180 634.8 372 78.5
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 7.2e-180 634.0 373 77.2
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 7.2e-180 634.0 367 78.5
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 9.4e-180 633.6 375 74.9
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.2e-179 633.3 372 77.4
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 2.1e-179 632.5 373 76.4
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 4.7e-179 631.3 374 77.0
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 6.1e-179 630.9 375 77.3
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.0e-178 630.2 374 77.3
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.4e-178 629.8 373 76.1
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.8e-178 629.4 373 77.5
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 3.0e-178 628.6 380 75.3
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.0e-178 628.2 373 76.4
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.2e-178 627.9 369 76.4
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 6.7e-178 627.5 372 77.2
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.1e-177 626.7 373 75.6
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.5e-177 626.3 375 77.9
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.6e-177 625.5 374 75.1
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 3.3e-177 625.2 374 75.7
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.7e-177 624.4 370 75.7
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.7e-176 622.9 372 75.5
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.2e-176 622.5 374 75.7
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 6.3e-176 620.9 375 75.2
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 6.3e-176 620.9 373 75.3
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 2.4e-175 619.0 374 75.7
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 3.1e-175 618.6 374 75.4
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 4.1e-175 618.2 375 74.7
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 5.3e-175 617.8 374 74.6
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 9.1e-175 617.1 370 74.9
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.2e-174 616.7 384 73.7
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.0e-174 615.9 374 75.1
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.0e-174 615.9 376 75.0
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.5e-174 614.8 392 72.7
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 7.7e-174 614.0 374 73.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.0e-173 613.6 369 75.3
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.0e-173 613.6 373 73.2
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 2.9e-173 612.1 374 74.1
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.0e-173 611.3 374 72.7
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 6.5e-173 610.9 373 74.3
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.1e-172 610.1 373 74.0
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 9.4e-172 607.1 368 74.7
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.2e-171 606.7 369 75.1
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.2e-171 606.7 374 74.1
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.4e-170 603.2 368 73.6
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 2.3e-170 602.4 371 73.3
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 4.0e-170 601.7 368 74.7
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 5.2e-170 601.3 373 73.2
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 6.8e-170 600.9 369 75.1
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 6.8e-170 600.9 369 75.1
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 6.8e-170 600.9 374 73.3
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.6e-169 599.0 370 74.9
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 2.6e-169 599.0 368 74.5
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 3.4e-169 598.6 369 74.5
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.3e-168 596.7 369 74.5
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.3e-168 596.7 369 74.3
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.2e-168 595.9 350 77.1
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 4.8e-168 594.7 369 74.3
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 1.1e-167 593.6 374 72.2
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 1.8e-167 592.8 371 72.8
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 3.1e-167 592.0 368 73.9
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 9.1e-167 590.5 371 71.7
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 9.1e-167 590.5 358 74.9
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.7e-165 586.3 383 71.8
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.2e-165 585.9 373 70.2
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.5e-164 581.3 379 69.9
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 2.7e-163 578.9 401 67.8
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 3.6e-163 578.6 373 72.1
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 4.7e-163 578.2 455 62.2
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 5.7e-161 571.2 368 71.7
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 4.9e-160 568.2 369 72.4
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 8.3e-160 567.4 381 70.1
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 8.3e-160 567.4 419 64.2
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.4e-159 566.6 379 69.9
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.5e-158 562.0 347 73.2
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.3e-157 559.3 406 65.0
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.6e-155 553.1 372 67.7
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.3e-154 549.3 378 65.9
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 4.0e-154 548.5 404 65.1
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 7.0e-151 537.7 369 69.4
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 9.2e-151 537.3 371 65.2
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.0e-149 533.9 372 65.3
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.3e-149 533.5 376 65.2
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.0e-149 532.3 293 83.6
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 3.3e-148 528.9 368 64.7
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.2e-146 521.5 364 65.1
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 8.9e-146 520.8 377 63.1
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 2.0e-145 519.6 309 77.0
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 3.3e-140 502.3 375 66.1
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.9e-135 486.5 419 57.8
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 8.4e-128 461.1 388 57.7
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 6.6e-125 451.4 258 78.7
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 2.6e-121 439.5 387 58.7
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 5.1e-109 398.7 345 59.1
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.9e-96 355.5 216 72.7
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.5e-95 353.2 251 65.7
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.9e-92 343.6 386 45.9
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.5e-92 343.2 229 67.2
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.7e-91 339.3 221 69.2
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 2.1e-86 323.6 384 44.5
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.5e-84 317.4 375 45.6
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 1.6e-83 313.9 395 43.3
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.0e-77 294.7 195 67.7
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.4e-74 283.5 167 70.7
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 7.2e-71 271.9 172 69.8
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.2e-62 244.6 171 67.8
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.4e-45 188.0 475 29.1
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 3.5e-41 173.3 91 81.3
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.4e-37 161.4 129 68.2
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 2.6e-36 157.1 85 88.2
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.0e-32 145.2 100 71.0
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 3.0e-32 143.7 100 70.0
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 2.9e-27 127.1 95 64.2
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.1e-21 108.6 340 27.1
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 2.2e-19 100.9 163 36.8
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 3.0e-16 90.5 45 91.1
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 6.6e-16 89.4 46 82.6
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 9.5e-15 85.5 43 86.0
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 9.5e-15 85.5 47 78.7
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.5e-12 78.2 41 85.4
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 2.8e-06 57.4 29 69.0
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 3.6e-06 57.0 30 70.0
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 6.2e-06 56.2 32 75.0
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 6.2e-06 56.2 32 75.0


User provided reference genes

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