Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 0.0e+00 1328.2 709 100.0
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 0.0e+00 1237.6 712 91.4
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 0.0e+00 1164.8 714 87.0
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 0.0e+00 1140.9 716 85.9
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 0.0e+00 1105.9 713 80.5
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 8.5e-307 1056.6 712 79.8
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.3e-302 1042.7 715 80.3
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 4.1e-301 1037.7 711 78.5
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 1.1e-298 1029.6 712 78.1
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.4e-296 1022.7 713 77.7
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 1.4e-293 1012.7 747 75.9
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 2.6e-292 1008.4 712 76.7
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 2.9e-267 925.2 716 70.9
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.0e-256 890.2 721 68.7
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 2.8e-249 865.5 720 65.8
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.6e-244 849.7 721 67.7
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 3.5e-244 848.6 719 66.6
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.2e-241 840.1 724 65.5
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 4.4e-239 831.6 717 65.4
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 4.4e-239 831.6 716 64.9
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.9e-237 826.2 718 64.1
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 5.4e-237 824.7 717 65.4
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.6e-236 823.2 716 64.7
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 1.3e-235 820.1 705 65.2
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 5.6e-234 814.7 718 62.7
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 9.5e-234 813.9 717 65.3
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.1e-232 810.4 715 66.2
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 1.4e-232 810.1 710 65.5
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 7.6e-231 804.3 719 64.5
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 2.2e-230 802.7 721 65.2
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 3.8e-230 802.0 711 64.4
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.9e-229 799.7 715 64.2
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.6e-228 796.6 719 63.0
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 6.6e-227 791.2 719 64.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 4.7e-225 785.0 727 63.8
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.0e-223 779.6 729 62.8
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.0e-219 767.3 733 60.3
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.6e-217 760.0 718 61.6
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 4.5e-215 751.9 749 58.1
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.9e-214 749.2 724 60.5
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.5e-212 742.3 718 60.4
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 3.0e-211 739.2 712 58.3
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 1.5e-210 736.9 723 61.8
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 1.3e-209 733.8 718 59.6
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.3e-209 733.8 609 67.3
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 2.1e-209 733.0 719 59.4
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 2.1e-209 733.0 718 61.3
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 4.8e-209 731.9 719 62.4
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 8.1e-209 731.1 729 59.8
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 5.3e-208 728.4 715 59.6
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 6.9e-208 728.0 719 59.0
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.0e-207 726.5 717 59.6
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 2.6e-207 726.1 717 59.1
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 4.2e-205 718.8 720 60.4
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 3.5e-204 715.7 734 60.4
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.3e-203 713.8 720 58.9
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 5.1e-203 711.8 714 59.1
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 3.3e-202 709.1 710 59.6
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 9.6e-202 707.6 716 58.2
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 6.2e-201 704.9 721 58.7
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.6e-199 699.5 555 66.3
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 3.4e-199 699.1 715 57.8
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 1.6e-196 690.3 727 57.5
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.9e-194 683.3 712 55.5
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 2.5e-194 682.9 713 56.9
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 3.3e-194 682.6 717 56.2
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 9.7e-194 681.0 585 64.1
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 4.8e-193 678.7 714 56.4
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 8.2e-193 677.9 714 55.6
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 8.2e-193 677.9 710 57.6
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 5.3e-192 675.2 725 56.7
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 6.9e-192 674.9 641 60.4
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.5e-191 673.7 722 56.8
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 3.4e-191 672.5 712 55.8
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 5.9e-191 671.8 720 55.4
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 2.2e-190 669.8 715 56.4
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 3.8e-190 669.1 719 56.3
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 1.1e-189 667.5 719 56.5
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 7.2e-189 664.8 732 57.7
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 8.8e-187 657.9 709 56.3
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.1e-186 657.5 720 55.3
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.1e-186 657.5 694 56.8
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 1.5e-186 657.1 713 55.0
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 2.0e-186 656.8 720 55.1
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.5e-186 656.4 728 54.8
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.6e-183 646.4 720 55.7
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 4.5e-183 645.6 603 60.9
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.2e-182 643.3 718 55.3
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 5.5e-181 638.6 603 60.7
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 9.4e-181 637.9 718 53.8
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 1.2e-180 637.5 548 64.2
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 3.0e-179 632.9 716 53.9
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 3.0e-179 632.9 719 53.7
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 3.9e-179 632.5 716 53.9
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 9.7e-178 627.9 769 52.5
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 8.2e-177 624.8 718 52.9
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.2e-174 616.7 545 63.1
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.2e-167 594.3 552 61.2
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.6e-167 594.0 729 51.4
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 8.8e-163 578.2 720 52.2
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 3.7e-161 572.8 658 55.8
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 2.4e-160 570.1 576 57.6
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.1e-160 569.3 731 50.2
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.3e-142 511.1 572 53.3
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.6e-138 496.9 504 57.3
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 9.8e-138 495.0 453 63.6
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 3.7e-137 493.0 573 52.7
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 4.9e-137 492.7 667 47.2
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 2.4e-136 490.3 627 49.8
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 1.6e-132 477.6 670 46.1
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 2.4e-115 420.6 330 67.6
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 2.2e-113 414.1 358 65.4
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 1.2e-111 408.3 332 67.2
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.0e-110 405.2 372 64.8
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 5.1e-110 402.9 375 63.7
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 3.4e-106 390.2 323 65.9
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 1.9e-104 384.4 571 43.6
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.9e-101 374.4 397 57.2
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 6.5e-89 332.8 845 32.7
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 4.2e-88 330.1 806 34.4
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 4.5e-74 283.5 375 48.8
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 1.4e-72 278.5 371 46.4
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 7.9e-71 272.7 243 63.4
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 1.5e-66 258.5 142 94.4
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-64 251.5 346 52.9
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 9.4e-64 249.2 219 62.6
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.3e-51 206.8 302 45.7
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 3.5e-50 204.1 240 54.6
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 3.1e-43 181.0 136 73.5
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 1.2e-42 179.1 289 41.2
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.2e-40 170.6 128 72.7
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 4.4e-37 160.6 216 49.5
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.3e-36 159.1 197 44.2
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.4e-29 134.4 278 36.7
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 8.3e-28 129.8 160 46.9
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.1e-24 119.4 401 29.4
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 4.7e-15 87.4 164 41.5
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 3.4e-13 81.3 81 59.3
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 9.2e-11 73.2 122 44.3
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.0e-09 69.7 98 38.8
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.1e-08 66.2 102 41.2
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 1.5e-08 65.9 61 47.5
Lj5P134T60 Lonicera japonica HOM05D000874 ORTHO05D001267 6.2e-07 60.5 69 40.6
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 1.1e-06 59.7 101 36.6
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 5.2e-06 57.4 98 37.8
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 5.2e-06 57.4 87 42.5
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 5.2e-06 57.4 69 39.1
AUR62039650 Chenopodium quinoa HOM05D000874 ORTHO05D001267 6.8e-06 57.0 69 37.7
Pp3c12_4860 Physcomitrium patens HOM05D000874 ORTHO05D001267 6.8e-06 57.0 109 35.8
TAR629G2997 Trochodendron aralioides HOM05D000874 ORTHO05D001267 6.8e-06 57.0 53 50.9


User provided reference genes

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