Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 3106.2 1700 100.0
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 2861.6 1700 93.5
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 2657.9 1701 87.7
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 2620.5 1702 86.5
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 2395.5 1723 79.6
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 2321.2 1714 77.3
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 2280.0 1704 77.5
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 2249.9 1680 77.8
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 2245.3 1717 75.4
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 2232.2 1706 76.0
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 2184.8 1705 75.0
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1784.2 1725 63.4
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1699.1 1713 61.6
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1682.5 1719 59.9
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1665.6 1724 60.7
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1662.1 1724 60.3
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1655.2 1747 58.8
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1649.4 1712 60.9
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1634.4 1713 59.1
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1614.7 1718 59.5
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1583.9 1714 58.7
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1557.7 1660 56.5
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1549.6 1740 57.8
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1523.5 1711 57.3
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1518.8 1804 55.1
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1518.8 1926 52.2
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1516.5 1711 57.5
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1515.7 1710 57.4
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1515.7 1708 57.3
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1506.5 1714 56.9
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1506.1 1738 54.3
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1501.1 1730 55.8
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1489.6 1710 56.2
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1488.4 1727 55.5
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1485.3 1716 54.4
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1479.9 1706 56.1
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1479.5 1510 62.1
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1478.8 1731 55.6
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1458.4 1783 52.8
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1456.4 1732 53.4
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1453.3 1728 54.1
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1435.6 1742 53.2
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1393.6 1418 60.6
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1388.6 1609 56.4
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1375.5 1515 59.8
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1356.3 1730 50.6
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1326.2 1712 52.3
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1318.5 1711 52.3
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1318.5 1732 51.9
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1317.4 1212 65.6
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1312.4 1819 50.0
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1308.1 1720 51.6
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1307.4 1743 50.5
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1307.4 1746 51.0
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1300.4 1782 51.0
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1294.6 1727 50.9
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1289.6 1310 63.6
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1289.2 1717 48.0
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1278.5 1810 50.4
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1257.3 1246 62.6
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1256.1 1744 49.1
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1242.6 1698 49.1
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1233.4 1702 49.1
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1228.0 1493 52.4
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1193.3 1696 48.1
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1189.9 1752 46.1
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1152.9 1253 59.0
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1145.2 1488 53.4
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 1127.5 1262 58.1
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1120.5 960 65.5
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1094.3 1495 51.4
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 0.0e+00 1083.6 1231 57.4
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 0.0e+00 1081.6 1252 56.0
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 4.4e-309 1065.4 1385 51.6
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 1.5e-296 1023.8 1764 43.0
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.2e-284 983.4 956 61.2
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 4.4e-277 959.1 1524 45.9
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 7.8e-266 921.8 1041 59.5
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 9.5e-264 914.8 822 62.8
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 4.4e-253 879.4 1469 44.9
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 1.3e-239 834.7 1133 49.7
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 2.9e-236 823.5 1437 44.4
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 1.5e-229 801.2 1241 48.0
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 5.7e-168 596.7 1073 45.2
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 4.1e-158 563.9 964 42.4
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 1.6e-138 498.8 737 46.3
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.8e-138 498.0 548 56.6
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 3.9e-132 477.6 872 42.9
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 1.8e-121 442.2 1292 32.0
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.0e-120 438.7 725 43.4
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 4.4e-83 314.7 710 37.2
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 1.2e-80 306.6 739 38.3
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 4.4e-75 288.1 257 59.1
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 7.7e-72 277.3 245 61.6
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 1.4e-60 240.0 492 37.8
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 7.5e-59 234.2 213 61.0
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 4.7e-53 214.9 234 52.1
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.0e-43 183.0 165 60.6
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.4e-43 181.8 166 57.8
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 1.7e-42 179.9 190 56.8
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 1.2e-40 173.7 150 61.3
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.0e-32 144.8 131 70.2
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-31 144.1 279 36.6
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 2.3e-31 142.9 1404 22.4
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 7.6e-27 127.9 133 54.9
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 1.4e-25 123.6 232 32.3
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 1.1e-22 114.0 279 29.4
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-20 106.3 98 58.2
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 2.4e-20 106.3 160 41.9
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 8.4e-18 97.8 282 31.6
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.4e-17 97.1 87 59.8
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.1e-16 93.2 63 73.0
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 1.3e-13 84.0 82 53.7
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-12 80.9 134 39.6
Nn1g01396 Nelumbo nucifera HOM05D001674 ORTHO05D008599 1.1e-06 60.8 51 60.8


User provided reference genes

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