Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 2.6e-255 884.8 419 100.0
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 2.5e-218 761.9 412 85.7
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 2.5e-213 745.3 414 84.3
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 8.2e-209 730.3 414 83.6
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 6.1e-204 714.1 413 81.6
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 3.3e-202 708.4 423 79.9
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 1.6e-199 699.5 414 80.2
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 5.7e-194 681.0 423 77.8
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 2.6e-178 629.0 380 78.4
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 4.4e-178 628.2 392 72.2
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 2.8e-177 625.5 388 74.0
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.2e-175 620.2 396 74.0
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.5e-173 613.2 376 74.2
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 1.9e-173 612.8 367 74.9
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 5.6e-173 611.3 368 75.5
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 1.2e-172 610.1 371 74.1
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 6.1e-172 607.8 367 76.3
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 8.0e-172 607.4 369 74.0
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 4.0e-171 605.1 384 71.9
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.2e-170 603.6 369 73.2
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 1.5e-170 603.2 395 69.9
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.6e-170 602.4 368 72.8
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 3.4e-170 602.1 416 67.8
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 2.2e-169 599.4 412 66.5
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 2.2e-169 599.4 367 73.8
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 2.9e-169 599.0 397 70.0
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 3.7e-169 598.6 399 68.4
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 3.7e-169 598.6 381 72.2
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 8.3e-169 597.4 381 70.9
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 1.1e-168 597.0 414 67.1
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 3.2e-168 595.5 500 60.0
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.2e-168 595.5 367 73.3
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.2e-167 593.6 416 65.9
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 1.2e-167 593.6 389 69.9
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 2.0e-167 592.8 398 69.8
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 2.0e-167 592.8 392 70.4
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 4.6e-167 591.7 364 73.1
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 1.0e-166 590.5 398 67.8
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.0e-166 590.5 396 69.2
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 5.0e-166 588.2 368 74.2
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 6.6e-166 587.8 381 70.1
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 1.1e-165 587.0 367 71.7
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 1.9e-165 586.3 390 66.9
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 1.9e-165 586.3 367 72.8
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.3e-165 585.5 367 72.2
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 7.3e-165 584.3 422 65.2
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 7.3e-165 584.3 373 71.6
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 1.6e-164 583.2 404 66.3
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 2.8e-164 582.4 415 64.3
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 2.8e-164 582.4 378 70.6
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 3.6e-164 582.0 421 63.7
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.6e-164 582.0 367 72.2
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 8.0e-164 580.9 294 91.2
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 2.3e-163 579.3 373 70.2
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 5.2e-163 578.2 389 67.9
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 2.0e-162 576.2 373 70.2
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 5.8e-162 574.7 402 64.7
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 1.1e-160 570.5 347 75.2
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 1.1e-160 570.5 383 67.6
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 1.9e-160 569.7 371 69.5
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 4.1e-160 568.5 364 70.1
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 7.0e-160 567.8 345 74.8
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.3e-158 563.5 365 68.8
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 5.6e-157 558.1 371 67.7
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 1.6e-156 556.6 400 63.8
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 2.8e-156 555.8 397 65.5
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 4.0e-155 552.0 367 68.1
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 6.8e-155 551.2 421 61.0
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 8.9e-155 550.8 401 62.8
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 4.4e-154 548.5 395 63.0
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 5.8e-154 548.1 382 64.4
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 1.3e-153 547.0 421 62.5
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 2.9e-153 545.8 374 67.1
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 6.4e-153 544.7 395 64.1
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 8.3e-153 544.3 371 65.5
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 1.4e-152 543.5 396 63.6
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 1.4e-152 543.5 396 63.6
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 2.4e-152 542.7 371 66.0
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 1.2e-151 540.4 374 66.3
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 2.1e-151 539.7 394 64.7
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 2.1e-151 539.7 372 65.1
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 3.5e-151 538.9 349 72.2
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 4.6e-151 538.5 371 64.7
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 1.0e-150 537.3 372 65.1
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 3.9e-150 535.4 379 65.4
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 1.5e-149 533.5 364 67.6
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 3.3e-149 532.3 371 64.7
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 7.3e-149 531.2 428 59.3
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 5.8e-146 521.5 340 70.9
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 9.2e-144 514.2 368 64.9
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.3e-142 510.4 379 59.9
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 9.9e-138 494.2 323 68.7
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.9e-136 490.0 305 71.5
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 7.1e-136 488.0 366 59.8
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 2.0e-130 469.9 369 58.0
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 3.4e-130 469.2 403 54.8
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 2.2e-129 466.5 317 69.1
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 5.1e-126 455.3 366 54.9
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.8e-124 449.5 411 51.1
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 4.9e-121 438.7 385 54.0
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 2.4e-120 436.4 301 66.4
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 1.5e-109 400.6 370 50.0
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 2.5e-104 383.3 259 70.7
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 4.6e-103 379.0 281 66.2
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 1.9e-101 373.6 226 75.2
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 8.5e-89 331.6 365 45.8
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.2e-82 311.2 186 79.0
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 7.7e-82 308.5 367 45.5
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.3e-76 291.2 322 49.1
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 3.8e-73 279.6 241 58.1
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 3.6e-55 219.9 467 31.3
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 5.2e-54 216.1 194 53.6
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.9e-51 207.6 235 42.6
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 4.7e-47 193.0 102 85.3
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.3e-44 184.9 129 62.0
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 5.1e-25 119.8 204 35.3
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 2.8e-23 114.0 72 69.4
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.6e-21 107.5 60 80.0
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 2.9e-20 104.0 102 52.0
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 1.9e-19 101.3 61 73.8
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 2.1e-18 97.8 61 73.8
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 1.8e-14 84.7 65 60.0
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 7.6e-13 79.3 43 76.7
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 6.4e-12 76.3 51 62.7
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 7.9e-10 69.3 56 55.4
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 4.8e-07 60.1 44 70.5


User provided reference genes

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