Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 2.7e-216 755.0 368 100.0
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 3.9e-178 628.2 367 83.9
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 2.9e-173 612.1 362 82.3
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 5.4e-172 607.8 362 82.0
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 4.6e-171 604.7 362 83.1
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 3.9e-170 601.7 362 81.2
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 3.9e-170 601.7 362 81.2
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 6.6e-170 600.9 362 81.2
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 6.6e-170 600.9 362 81.2
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 6.6e-170 600.9 362 81.2
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 8.6e-170 600.5 362 81.5
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.1e-169 600.1 362 81.8
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.5e-169 599.7 362 81.2
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.5e-169 599.0 362 82.0
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 3.3e-169 598.6 362 81.2
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 4.3e-169 598.2 362 81.5
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 7.3e-169 597.4 367 79.0
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 7.3e-169 597.4 362 80.9
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 3.6e-168 595.1 365 80.0
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 6.2e-168 594.3 369 80.2
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 8.1e-168 594.0 362 82.0
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.1e-167 593.6 362 80.7
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 2.3e-167 592.4 362 80.7
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 5.2e-167 591.3 368 80.7
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 5.2e-167 591.3 363 80.7
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 6.8e-167 590.9 365 79.5
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 8.9e-167 590.5 401 73.8
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.5e-166 589.7 362 79.8
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.5e-166 589.7 368 80.2
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.5e-166 589.7 363 81.5
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.5e-166 589.7 362 79.8
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 2.6e-166 589.0 365 79.7
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 4.4e-166 588.2 369 79.7
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 4.4e-166 588.2 359 79.7
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 5.8e-166 587.8 377 77.7
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 9.9e-166 587.0 365 79.5
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 9.9e-166 587.0 362 81.2
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.7e-165 586.3 369 79.1
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 1.7e-165 586.3 363 79.9
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 4.9e-165 584.7 365 78.6
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 8.3e-165 583.9 361 80.6
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.1e-164 583.6 363 79.9
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.9e-164 582.8 362 80.4
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.9e-164 582.8 363 79.9
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 4.1e-164 581.6 362 79.3
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 7.1e-164 580.9 364 79.9
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.7e-163 578.9 363 78.2
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.7e-163 578.9 363 78.0
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 4.6e-163 578.2 363 78.2
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 4.6e-163 578.2 363 78.0
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 6.0e-163 577.8 363 78.0
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 6.0e-163 577.8 363 77.7
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.8e-163 577.4 362 79.0
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 7.8e-163 577.4 362 78.7
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 7.8e-163 577.4 361 77.8
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 1.0e-162 577.0 363 77.7
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 1.7e-162 576.2 363 77.4
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.7e-162 576.2 360 77.8
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.7e-162 576.2 362 79.6
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 3.0e-162 575.5 362 77.9
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 3.0e-162 575.5 364 77.7
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 3.9e-162 575.1 362 78.5
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.9e-162 575.1 362 77.6
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 3.9e-162 575.1 361 77.6
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 8.6e-162 573.9 364 76.6
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 8.6e-162 573.9 364 76.6
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 8.6e-162 573.9 364 76.6
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 8.6e-162 573.9 364 76.6
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 8.6e-162 573.9 364 76.6
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 8.6e-162 573.9 359 78.3
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.1e-161 573.5 362 77.3
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.1e-161 573.5 362 77.3
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 1.5e-161 573.2 353 79.6
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.5e-161 573.2 362 78.7
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.9e-161 572.8 363 78.0
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.9e-161 572.8 363 78.0
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.5e-161 572.4 362 78.2
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 3.3e-161 572.0 365 75.9
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 1.2e-160 570.1 359 78.0
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.6e-160 569.7 359 77.7
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 2.1e-160 569.3 362 77.6
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.8e-160 568.9 361 78.1
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 6.2e-160 567.8 362 77.1
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 8.1e-160 567.4 362 76.8
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 8.9e-159 563.9 394 72.1
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.5e-158 563.1 362 76.5
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.5e-158 563.1 361 76.7
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 4.4e-158 561.6 363 75.5
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 9.9e-158 560.5 389 73.5
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.3e-157 560.1 364 76.6
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.7e-157 559.7 353 79.0
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 2.2e-157 559.3 363 75.2
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.9e-157 558.9 362 75.4
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.9e-157 558.9 363 75.2
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 6.4e-157 557.8 376 74.5
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 8.4e-157 557.4 365 74.8
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 5.4e-156 554.7 371 73.3
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 5.4e-156 554.7 365 75.9
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 9.2e-156 553.9 367 74.4
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 9.2e-156 553.9 362 74.9
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 9.2e-156 553.9 362 75.1
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.6e-155 553.1 359 75.5
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 3.5e-155 552.0 362 76.5
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 7.8e-155 550.8 361 73.7
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.3e-154 550.1 342 79.5
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.7e-154 549.7 348 77.6
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 8.7e-154 547.4 363 74.7
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 2.5e-153 545.8 362 74.0
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.8e-151 539.7 343 77.6
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.8e-151 539.7 360 74.2
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 2.4e-151 539.3 362 73.2
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 4.0e-151 538.5 365 73.7
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 5.8e-150 534.6 343 77.6
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 7.6e-150 534.3 358 74.0
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.3e-149 533.5 365 72.1
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 2.2e-149 532.7 364 72.8
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.2e-149 532.7 361 72.3
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 6.4e-149 531.2 370 73.8
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 4.2e-148 528.5 357 72.0
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 7.1e-148 527.7 361 71.7
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 1.6e-147 526.6 361 71.7
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.7e-147 525.8 428 65.0
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 2.7e-147 525.8 362 74.6
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 3.5e-147 525.4 361 72.9
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.0e-146 523.9 362 74.0
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 2.3e-146 522.7 362 72.1
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 2.3e-146 522.7 362 71.8
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 3.0e-146 522.3 366 69.9
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 8.7e-146 520.8 360 70.6
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.5e-145 520.0 361 71.5
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 2.5e-145 519.2 360 70.6
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 2.1e-144 516.2 365 70.7
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.1e-144 516.2 341 74.2
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 6.9e-143 511.1 363 69.4
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 9.0e-143 510.8 269 91.8
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.5e-142 510.0 362 69.6
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 7.9e-139 497.7 343 73.8
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 2.5e-137 492.7 366 69.1
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 4.3e-137 491.9 350 67.7
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 5.6e-137 491.5 388 66.8
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.8e-136 489.2 364 65.9
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 8.1e-136 487.6 365 65.8
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.1e-135 487.3 362 65.2
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 7.6e-134 481.1 349 67.6
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 6.0e-131 471.5 355 64.2
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 3.0e-130 469.2 364 63.2
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 3.1e-127 459.1 364 62.6
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 1.1e-124 450.7 291 76.6
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.2e-123 447.2 351 62.7
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.2e-123 447.2 345 68.1
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.3e-122 443.7 328 68.9
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.3e-122 443.7 286 76.6
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 3.9e-122 442.2 274 79.6
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 1.5e-121 440.3 360 62.8
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.1e-119 434.1 275 77.1
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.8e-117 425.6 276 77.5
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.1e-116 424.1 327 67.0
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.6e-115 420.2 268 75.7
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 6.1e-115 418.3 268 77.2
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.7e-112 410.2 366 58.5
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 4.1e-111 405.6 284 72.2
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.4e-108 397.1 346 56.6
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 1.4e-106 390.6 379 53.3
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.5e-105 387.1 242 78.9
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 3.1e-103 379.4 350 54.0
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.3e-101 374.0 271 67.5
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.2e-85 320.1 270 62.2
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 7.2e-84 315.1 203 77.3
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.7e-80 302.8 180 82.8
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 4.5e-78 295.8 187 77.0
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.7e-77 293.9 197 72.6
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 2.8e-59 233.4 160 71.2
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.6e-54 217.6 113 96.5
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 7.3e-52 208.8 269 48.3
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 4.4e-49 199.5 359 32.3
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 3.6e-43 179.9 426 27.9
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 2.4e-42 177.2 382 26.7
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 7.3e-36 155.6 119 64.7
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 3.6e-35 153.3 147 57.8
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.1e-34 151.8 291 30.6
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.8e-34 151.0 119 63.0
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 2.4e-34 150.6 115 62.6
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 3.0e-21 107.1 82 64.6
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 2.4e-10 70.9 49 75.5
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 6.1e-06 56.2 59 55.9


User provided reference genes

Program Settings