Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 2117.4 1111 100.0
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1946.0 1105 93.6
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1823.1 1113 87.1
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1818.5 1106 87.2
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1686.8 1102 81.4
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1670.2 1107 80.1
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1669.4 1103 80.5
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1653.6 1101 79.5
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1605.1 1106 77.6
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1603.2 1061 80.0
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1569.7 1106 76.2
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1413.3 1099 66.0
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1381.7 1147 65.2
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1364.7 1102 65.9
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1355.5 1101 64.4
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1349.7 1103 64.9
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1306.6 1103 62.8
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1306.2 1100 63.9
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1303.5 1099 64.8
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1300.4 1093 63.6
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1295.0 1103 62.4
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1290.8 1104 63.0
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1281.9 1091 63.4
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1281.2 1098 63.1
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1273.5 1098 62.7
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1272.7 1103 62.2
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1272.7 1101 62.2
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1271.9 1103 61.2
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1267.3 977 65.0
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1261.5 1103 61.1
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1261.1 1101 61.9
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1261.1 1100 62.8
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1254.6 1119 60.2
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1248.0 1098 62.0
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1238.4 1098 59.8
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1222.6 1065 63.2
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1218.4 1094 60.6
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1210.7 1075 60.9
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1208.4 1105 58.3
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1206.4 1104 60.3
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1196.4 1108 59.4
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1192.9 1104 57.7
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1185.6 1079 58.3
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1182.5 1109 59.8
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1172.5 1098 57.5
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1156.4 1101 58.1
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1128.6 1106 56.9
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1128.6 1104 54.9
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1125.2 1104 54.7
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1123.2 1078 59.1
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1119.8 1204 51.9
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1117.1 1105 57.2
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1116.7 1100 56.1
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1115.1 1100 57.5
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1112.4 1100 57.3
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1112.1 1098 57.8
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1109.7 1098 56.4
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1103.6 1137 53.6
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1095.5 1108 54.2
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1095.1 1116 56.2
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1094.7 1104 54.1
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1092.8 1100 56.1
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 0.0e+00 1089.7 1100 55.7
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1087.8 1104 53.7
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1087.4 1125 55.9
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1086.6 1108 53.6
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 4.4e-310 1068.1 1075 54.4
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 7.5e-310 1067.4 1103 54.8
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 1.8e-308 1062.8 1109 53.1
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 7.0e-308 1060.8 1108 53.2
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 7.0e-308 1060.8 1106 52.9
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 3.5e-307 1058.5 1014 55.9
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 1.4e-303 1046.6 1176 52.8
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 6.8e-303 1044.3 1101 53.8
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 1.1e-300 1036.9 1122 53.5
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 5.0e-298 1028.1 1035 55.4
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 1.9e-297 1026.2 1103 51.0
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.5e-289 1000.0 1097 50.3
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 5.6e-289 998.0 1120 50.3
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 7.6e-286 987.6 1110 51.0
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 1.3e-264 917.1 1113 50.8
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 6.9e-263 911.4 1116 50.8
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 1.7e-261 906.7 636 77.8
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.3e-234 816.6 1115 43.4
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.6e-222 777.3 1107 42.4
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.6e-222 777.3 1107 42.4
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.3e-221 774.2 654 60.6
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.1e-220 771.2 599 68.3
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.2e-209 734.6 1141 40.8
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 2.0e-209 733.8 719 56.5
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 3.5e-198 696.4 467 77.5
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 8.9e-186 655.2 1033 38.5
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 5.8e-177 625.9 1071 36.7
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 9.2e-175 618.6 504 60.5
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 6.0e-134 483.0 435 57.7
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 6.5e-112 409.8 859 32.4
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 4.8e-107 393.7 469 45.2
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 3.2e-103 380.9 442 53.6
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.8e-93 348.6 451 47.9
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 5.0e-80 303.9 375 45.3
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 6.8e-77 293.5 405 46.9
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.2e-76 292.7 340 50.6
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 1.7e-75 288.9 914 28.6
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 3.7e-75 287.7 219 60.7
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 5.4e-74 283.9 297 51.5
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 5.2e-69 267.3 452 36.3
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 2.8e-62 245.0 748 26.6
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 4.4e-52 211.1 669 28.1
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 1.6e-46 192.6 158 61.4
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 3.8e-43 181.4 189 57.7
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 6.4e-43 180.6 215 53.0
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.2e-35 155.6 87 82.8
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 1.1e-31 143.3 111 69.4
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 4.3e-31 141.4 141 58.9
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 5.6e-31 141.0 160 50.0
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.4e-29 135.6 143 53.1
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 7.6e-28 130.6 90 70.0
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.1e-26 124.0 119 50.4
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 7.1e-26 124.0 122 50.8
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.2e-25 123.2 147 61.2
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.7e-24 117.5 96 57.3
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 1.5e-23 116.3 166 58.4
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.5e-23 115.5 104 51.9
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 3.7e-22 111.7 218 44.0
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.7e-19 102.8 134 46.3
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 5.0e-19 101.3 117 46.2
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.5e-18 99.0 88 52.3
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 2.5e-18 99.0 133 40.6
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 2.7e-17 95.5 193 45.1
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 1.9e-15 89.4 644 23.4
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 1.9e-15 89.4 649 23.4
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 3.3e-15 88.6 133 38.3
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.3e-14 86.7 51 78.4
BolC6t37745H Brassica oleracea HOM05D002786 ORTHO05D003493 1.4e-13 83.2 635 22.5
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 1.4e-13 83.2 87 49.4
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 1.8e-13 82.8 644 22.5
BcaC08g44950 Brassica carinata HOM05D002786 ORTHO05D003493 1.8e-13 82.8 635 22.5
C06p25840 Brassica napus HOM05D002786 ORTHO05D003493 1.8e-13 82.8 635 22.5
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 3.1e-13 82.0 647 23.2
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 3.1e-13 82.0 87 48.3
A04p02290 Brassica napus HOM05D002786 ORTHO05D003493 5.3e-13 81.3 645 22.3
A07p24410 Brassica napus HOM05D002786 ORTHO05D003493 5.3e-13 81.3 635 22.4
BraA04t15960Z Brassica rapa HOM05D002786 ORTHO05D003493 5.3e-13 81.3 645 22.3
BraA07t30088Z Brassica rapa HOM05D002786 ORTHO05D003493 5.3e-13 81.3 635 22.4
BcaB02g08232 Brassica carinata HOM05D002786 ORTHO05D003493 1.2e-12 80.1 645 22.3
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 1.2e-12 80.1 657 22.5
AT3G59020 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 1.5e-12 79.7 651 22.4
BcaB02g07490 Brassica carinata HOM05D002786 ORTHO05D003493 2.0e-12 79.3 635 22.2
Carub.0005s2578 Capsella rubella HOM05D002786 ORTHO05D003493 2.6e-12 79.0 647 22.7
BcaC02g10037 Brassica carinata HOM05D002786 ORTHO05D003493 3.4e-12 78.6 645 22.2
C04p33640 Brassica napus HOM05D002786 ORTHO05D003493 3.4e-12 78.6 645 22.2
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 4.5e-12 78.2 65 56.9
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 4.5e-12 78.2 644 22.8
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 5.9e-12 77.8 62 62.9
AL5G40900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 1.0e-11 77.0 649 22.0
CDE09G0536 Ceratophyllum demersum HOM05D005298 ORTHO05D043882 5.0e-11 74.7 92 46.7
Thhalv10005763m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 6.5e-11 74.3 631 22.3
Aa31LG10G13510 Aethionema arabicum HOM05D002786 ORTHO05D003493 8.5e-11 73.9 645 22.6
BolC4t24933H Brassica oleracea HOM05D002786 ORTHO05D003493 1.6e-09 69.7 436 22.2
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 2.7e-09 68.9 61 50.8
THA.LOC104803420 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 3.6e-09 68.6 643 21.6
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 4.3e-07 61.6 521 22.3
Actinidia31594 Actinidia chinensis HOM05D005298 ORTHO05D026321 5.7e-07 61.2 114 40.4


User provided reference genes

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