Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 0.0e+00 1287.7 650 100.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 0.0e+00 1182.5 657 92.4
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 0.0e+00 1114.0 655 86.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 0.0e+00 1106.3 656 86.0
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 3.1e-311 1071.2 657 81.1
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 1.7e-301 1038.9 653 78.9
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 7.8e-299 1030.0 654 80.0
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 7.8e-299 1030.0 654 79.7
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 5.6e-297 1023.8 654 79.5
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.3e-290 1001.9 663 76.2
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 2.3e-287 991.9 654 78.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 4.3e-281 971.1 655 76.0
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 3.5e-267 924.9 656 70.3
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 3.5e-267 924.9 656 70.1
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.1e-257 893.3 652 67.8
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 9.6e-257 890.2 655 66.4
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.8e-255 885.9 652 66.7
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.5e-254 882.9 658 67.3
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 7.1e-252 874.0 656 65.9
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 4.6e-251 871.3 657 64.7
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 3.9e-250 868.2 651 67.0
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 8.7e-250 867.1 647 68.3
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.1e-249 866.7 655 66.6
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.6e-248 862.8 655 64.7
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 6.2e-248 860.9 650 65.8
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.4e-247 859.8 655 64.7
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.6e-246 855.5 654 65.3
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 3.8e-245 851.7 655 64.1
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.4e-245 850.5 644 66.0
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 8.4e-245 850.5 654 63.6
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.1e-244 850.1 655 65.0
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 6.7e-242 840.9 655 64.7
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.5e-241 839.0 657 63.6
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 9.7e-241 837.0 655 64.3
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 2.0e-238 829.3 656 63.6
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.4e-238 828.6 657 63.2
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 1.3e-237 826.6 654 63.5
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 3.8e-237 825.1 660 63.2
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 2.5e-236 822.4 658 63.8
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 4.2e-236 821.6 659 62.5
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.2e-235 820.1 646 62.5
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.6e-235 818.1 657 62.4
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.0e-234 815.5 657 62.3
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 1.1e-233 813.5 659 59.9
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.5e-233 812.4 657 62.6
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 2.5e-233 812.4 655 63.1
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 3.3e-233 812.0 665 63.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 7.4e-233 810.8 643 63.9
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 7.4e-233 810.8 658 63.4
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.0e-229 800.4 657 61.2
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 3.8e-229 798.5 657 61.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 6.5e-229 797.7 641 62.6
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 6.5e-229 797.7 657 60.9
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 8.5e-229 797.3 655 61.4
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.4e-228 796.6 682 59.1
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.1e-225 786.9 643 61.6
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 2.6e-225 785.8 654 59.9
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 1.3e-224 783.5 645 61.1
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 3.1e-223 778.9 655 60.3
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 7.0e-223 777.7 648 60.2
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 9.1e-223 777.3 645 59.8
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 9.1e-223 777.3 638 61.8
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.6e-222 775.8 656 59.5
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.3e-221 773.5 659 59.2
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 3.8e-221 771.9 659 59.2
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 6.5e-221 771.2 656 59.0
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 8.5e-221 770.8 658 58.2
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.9e-220 769.6 660 58.5
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 2.7e-219 765.8 659 57.7
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.7e-219 765.8 627 60.8
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 8.8e-218 760.8 648 59.4
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.1e-217 760.4 654 59.3
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 4.8e-216 755.0 647 58.6
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 6.3e-216 754.6 650 58.6
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.4e-215 752.7 647 58.7
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 2.4e-215 752.7 647 58.7
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 2.6e-214 749.2 649 58.6
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.7e-213 746.5 652 57.8
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.5e-212 743.4 652 57.7
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.5e-212 743.4 652 57.7
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 9.4e-212 740.7 645 58.9
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 9.7e-209 730.7 659 55.1
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 1.3e-208 730.3 647 57.7
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.5e-206 721.8 652 55.7
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 4.0e-202 708.8 654 55.7
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 8.8e-202 707.6 652 56.0
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.2e-201 707.2 645 58.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 1.5e-201 706.8 663 54.8
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 2.8e-200 702.6 647 53.2
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.1e-199 698.7 663 53.7
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.6e-198 696.8 641 57.9
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 5.0e-197 691.8 511 68.5
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 3.4e-193 679.1 651 53.6
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.1e-191 672.2 653 54.8
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 2.3e-189 666.4 683 50.8
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 4.4e-185 652.1 654 52.1
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.2e-182 644.0 659 52.4
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 4.1e-175 619.0 658 48.9
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 7.8e-174 614.8 488 62.5
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 7.1e-143 511.9 523 50.5
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.3e-139 501.1 414 60.6
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 4.6e-134 482.6 618 45.3
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 5.3e-130 469.2 356 65.7
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.5e-129 467.6 475 51.2
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 7.9e-126 455.3 670 39.3
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.1e-124 451.4 363 62.3
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 9.4e-111 405.2 645 37.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.2e-102 378.3 651 36.3
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.9e-96 357.1 500 41.4
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 8.8e-93 345.5 269 59.9
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.2e-88 330.9 366 47.5
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.7e-86 323.9 280 55.0
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 9.5e-79 298.9 760 29.6
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.6e-65 255.0 358 40.2
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 3.0e-64 250.8 710 27.7
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 8.6e-64 249.2 266 49.2
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 6.4e-59 233.0 270 47.4
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 7.3e-47 193.0 234 47.0
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 3.9e-32 144.1 231 32.9
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 3.6e-30 137.5 81 75.3
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-28 132.5 128 53.9
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.5e-23 114.8 103 49.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.5e-20 105.5 99 51.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.5e-20 105.5 243 31.3
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 3.4e-20 104.4 209 29.7
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.6e-20 103.2 104 51.0
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.0e-19 102.8 88 48.9
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.8e-19 100.9 65 76.9
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.1e-18 99.4 166 38.6
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.1e-18 99.4 209 31.6
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.2e-18 97.8 76 59.2
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.7e-14 84.3 90 51.1
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 4.1e-13 80.9 90 43.3
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 1.3e-11 75.9 96 41.7
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 2.1e-09 68.6 55 58.2
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 2.5e-07 61.6 41 82.9
Dinv21729 Davidia involucrata HOM05D005402 ORTHO05D007036 8.2e-06 56.6 65 50.8


User provided reference genes

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