Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 2.2e-307 1058.1 526 100.0
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 7.8e-265 916.8 536 86.2
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.7e-259 899.0 530 84.7
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 4.4e-252 874.4 535 82.6
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 4.9e-251 870.9 535 80.6
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 2.4e-250 868.6 544 81.2
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 2.9e-243 845.1 527 79.3
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 1.2e-241 839.7 531 76.6
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.9e-239 832.4 534 76.8
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 2.1e-238 828.9 531 76.1
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 1.4e-237 826.2 561 74.2
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 1.5e-236 822.8 530 76.8
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 2.9e-235 818.5 536 73.9
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 8.4e-235 817.0 526 76.0
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 4.2e-234 814.7 524 75.4
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 5.4e-234 814.3 528 75.9
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 9.3e-234 813.5 528 74.6
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.1e-233 812.4 526 75.7
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 1.3e-230 803.1 528 74.4
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 2.1e-230 802.4 555 71.7
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 2.1e-230 802.4 524 74.8
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 3.6e-230 801.6 526 74.7
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 4.0e-229 798.1 531 74.8
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.2e-228 796.6 525 74.5
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 2.2e-227 792.3 532 74.1
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 4.9e-227 791.2 531 74.0
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 4.2e-226 788.1 540 72.6
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 1.2e-225 786.6 569 69.1
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 3.5e-225 785.0 526 73.8
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.7e-224 782.7 521 73.3
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 3.0e-224 781.9 529 71.6
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 1.6e-222 776.2 529 71.1
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 2.1e-222 775.8 537 72.4
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 3.6e-222 775.0 535 72.0
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 1.8e-221 772.7 532 73.9
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 2.9e-219 765.4 541 70.6
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 3.8e-219 765.0 529 70.7
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.4e-218 763.1 554 70.4
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 9.3e-218 760.4 529 70.1
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.6e-217 759.6 522 71.1
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 3.5e-217 758.4 522 70.9
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 5.1e-216 754.6 530 70.0
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 6.7e-216 754.2 491 76.4
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 4.3e-215 751.5 543 68.5
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.3e-214 750.0 528 70.3
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 1.6e-214 749.6 563 66.6
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 2.1e-214 749.2 522 70.5
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 2.4e-213 745.7 529 69.8
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 5.3e-213 744.6 532 69.4
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 2.0e-212 742.7 522 69.3
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 2.0e-212 742.7 482 76.8
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 3.4e-212 741.9 528 69.9
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 7.6e-212 740.7 534 71.2
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 1.7e-211 739.6 519 69.6
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 6.5e-211 737.6 519 70.1
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.1e-209 732.6 523 69.4
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 4.6e-209 731.5 524 68.9
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.0e-208 730.3 530 68.7
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.3e-208 729.9 534 68.7
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 3.0e-208 728.8 520 68.7
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.5e-207 726.5 522 68.8
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.5e-207 726.5 522 68.8
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 1.9e-207 726.1 521 68.7
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 2.5e-207 725.7 522 68.8
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 8.2e-206 720.7 504 69.6
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.8e-205 719.5 522 69.0
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 7.6e-204 714.1 524 67.9
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.4e-202 709.9 529 66.4
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 2.7e-201 705.7 531 67.0
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 3.5e-201 705.3 531 63.7
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 1.8e-200 703.0 546 66.3
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 5.7e-199 698.0 524 67.2
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 7.4e-199 697.6 525 64.8
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 5.7e-191 671.4 550 63.3
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 3.7e-190 668.7 607 59.3
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.1e-189 667.2 481 69.6
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 1.6e-185 653.3 523 64.6
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 9.1e-181 637.5 509 64.4
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 4.7e-177 625.2 525 59.4
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 2.3e-176 622.9 525 61.3
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 4.5e-172 608.6 539 59.4
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 6.1e-169 598.2 523 56.2
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.5e-167 593.6 578 54.8
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 1.7e-166 590.1 521 54.7
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 3.2e-162 575.9 628 52.5
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 2.1e-161 573.2 531 56.3
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.0e-160 570.9 519 53.9
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.8e-160 570.1 525 55.6
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 2.8e-158 562.8 554 56.1
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 2.3e-155 553.1 525 56.6
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 7.2e-154 548.1 300 86.0
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 2.6e-151 539.7 529 51.6
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 3.3e-138 496.1 316 73.7
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 3.2e-133 479.6 556 52.3
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 2.1e-132 476.9 518 47.3
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 1.1e-130 471.1 300 71.7
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 4.4e-127 459.1 301 72.4
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 5.8e-119 432.2 445 54.4
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.1e-112 411.4 302 69.5
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 7.6e-111 405.2 244 79.1
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 2.1e-108 397.1 562 43.2
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 1.5e-90 337.8 638 32.1
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 4.3e-82 309.7 370 47.6
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 3.8e-78 296.6 212 74.1
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 3.0e-75 287.0 526 33.5
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 5.1e-67 259.6 573 32.1
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 4.8e-65 253.1 197 65.0
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 1.1e-61 241.9 210 64.3
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.0e-59 235.3 203 62.1
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 1.8e-59 234.6 210 62.9
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.5e-58 231.5 203 61.1
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.5e-58 231.5 203 61.1
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.2e-55 221.9 170 63.5
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.2e-46 191.0 103 83.5
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 4.5e-39 166.8 184 55.4
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.7e-33 148.3 85 77.6
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 1.6e-28 131.7 131 58.0
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 5.6e-21 106.7 201 32.8
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 6.0e-15 86.7 51 82.4
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 7.8e-15 86.3 409 22.7
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 8.6e-14 82.8 47 78.7
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.1e-11 75.9 117 43.6
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 8.9e-11 72.8 109 46.8
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.4e-08 65.5 31 87.1
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.4e-08 65.5 31 87.1
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.4e-08 65.5 31 87.1
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.4e-08 65.5 31 87.1
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 4.1e-08 63.9 31 83.9
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 2.1e-07 61.6 53 67.9
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 1.0e-06 59.3 54 64.8
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 3.0e-06 57.8 48 64.6


User provided reference genes

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