Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 0.0e+00 1100.1 890 100.0
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 2.3e-152 543.9 919 54.6
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.8e-113 414.1 434 60.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 4.4e-103 380.2 844 40.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-100 372.1 834 39.6
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.4e-88 331.3 893 48.6
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 6.9e-88 329.7 1267 39.2
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 3.2e-85 320.9 197 89.8
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 5.4e-85 320.1 197 89.8
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 2.0e-79 301.6 166 97.0
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 2.6e-79 301.2 166 96.4
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.1e-73 281.6 858 44.4
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 5.1e-43 180.6 841 27.9
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 3.5e-39 167.9 267 44.6
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 4.2e-37 161.0 1089 37.9
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 9.4e-37 159.8 275 46.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.6e-36 159.1 816 27.3
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.6e-34 151.8 873 26.2
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 2.2e-33 148.7 217 52.1
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.6e-31 142.5 865 26.8
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.0e-31 142.1 291 43.0
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 2.6e-31 141.7 286 42.7
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 2.6e-31 141.7 291 42.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 4.5e-31 141.0 291 39.9
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.9e-31 140.6 290 41.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.0e-30 139.8 884 25.7
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.0e-30 139.8 291 40.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.9e-30 138.3 463 33.9
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 8.5e-30 136.7 270 42.6
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 8.5e-30 136.7 214 43.5
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 8.5e-30 136.7 855 26.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.1e-29 136.3 402 42.5
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.1e-29 136.3 299 42.5
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 3.2e-29 134.8 887 24.7
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.2e-28 132.9 715 26.7
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.4e-27 129.4 270 41.5
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 3.0e-27 128.3 403 34.2
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 5.2e-27 127.5 282 39.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 6.7e-27 127.1 188 47.3
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 6.7e-27 127.1 217 45.6
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.2e-26 126.3 236 42.4
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.5e-26 125.9 233 42.1
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.6e-26 125.2 824 24.9
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.6e-26 125.2 266 38.3
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 3.3e-26 124.8 207 43.0
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 7.5e-26 123.6 301 36.5
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 9.7e-26 123.2 292 37.3
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 9.7e-26 123.2 147 55.1
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.2e-25 122.1 246 39.8
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 6.3e-25 120.6 278 36.7
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-24 119.8 817 25.3
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.4e-24 119.4 246 39.8
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.8e-24 119.0 233 42.1
Glyma.16G193050 Glycine max HOM05D004189 ORTHO05D004092 2.4e-24 118.6 64 93.8
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.4e-24 118.6 287 36.6
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.3e-24 117.5 236 39.8
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.6e-23 115.9 254 37.0
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.7e-23 115.2 234 41.5
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 4.5e-23 114.4 1036 34.9
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 4.5e-23 114.4 262 38.2
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.9e-23 114.0 796 25.0
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 6.5e-22 110.5 469 30.3
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.5e-21 109.4 276 37.3
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.1e-20 105.5 262 37.0
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.1e-20 105.5 227 38.3
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.6e-20 104.8 350 32.9
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 8.0e-20 103.6 292 36.6
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.0e-19 103.2 364 32.7
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.4e-19 102.8 253 39.5
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 4.0e-19 101.3 179 42.5
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 6.8e-19 100.5 237 35.0
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.2e-18 99.8 214 41.6
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.0e-18 99.0 363 32.2
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 2.0e-18 99.0 204 40.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.6e-18 98.6 231 38.1
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.6e-18 98.6 269 35.7
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 4.4e-18 97.8 463 29.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 5.7e-18 97.4 259 32.8
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-17 96.3 427 31.1
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.7e-17 95.9 237 37.6
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.7e-17 95.9 323 32.8
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.2e-17 95.5 288 34.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.2e-17 95.5 262 37.4
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 6.3e-17 94.0 151 40.4
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 8.3e-17 93.6 228 35.1
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.8e-16 92.4 118 43.2
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 7.0e-16 90.5 438 28.8
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 9.1e-16 90.1 303 35.3
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.7e-15 88.6 270 35.9
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.5e-15 88.2 216 36.1
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 3.5e-15 88.2 319 31.7
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.7e-15 87.0 253 33.6
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 7.7e-15 87.0 267 32.6
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.0e-14 86.7 277 32.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.0e-14 86.7 172 40.7
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.7e-14 85.9 289 33.2
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.3e-14 85.5 255 33.7
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 2.3e-14 85.5 257 32.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.3e-14 85.5 292 32.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.9e-14 85.1 288 31.6
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 3.8e-14 84.7 272 32.0
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 5.0e-14 84.3 340 28.8
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 5.0e-14 84.3 301 30.6
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 5.0e-14 84.3 120 46.7
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 6.6e-14 84.0 255 33.7
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.1e-13 83.2 247 32.0
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-13 82.8 347 29.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-13 82.4 278 31.3
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.9e-13 82.4 184 37.5
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.5e-13 82.0 210 36.7
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.5e-13 82.0 153 38.6
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 3.3e-13 81.6 278 32.0
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 3.3e-13 81.6 278 32.0
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 5.5e-13 80.9 290 30.3
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.2e-13 80.5 234 31.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.6e-12 79.3 160 40.6
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.8e-12 78.6 228 32.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 3.6e-12 78.2 284 31.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 6.1e-12 77.4 269 32.0
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 6.1e-12 77.4 284 31.7
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 6.1e-12 77.4 305 30.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.0e-11 76.6 259 31.3
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.0e-11 76.6 289 31.1
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-11 76.3 305 30.2
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-11 76.3 252 32.1
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.4e-11 76.3 444 27.9
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.8e-11 75.9 197 35.0
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 1.8e-11 75.9 444 27.3
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 4.0e-11 74.7 120 47.5
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 6.8e-11 73.9 200 32.5
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 8.9e-11 73.6 200 32.5
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.2e-10 73.2 201 32.8
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.5e-10 72.8 223 30.9
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.5e-10 72.8 132 44.7
TPR.G14317 Trifolium pratense HOM05D004189 ORTHO05D017062 2.0e-10 72.4 205 34.6
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 2.6e-10 72.0 202 32.7
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 4.4e-10 71.2 260 31.5
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 5.7e-10 70.9 214 34.1
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 2.8e-09 68.6 172 34.9
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 4.9e-09 67.8 217 33.6
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 8.3e-09 67.0 141 31.9
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-08 66.2 288 30.9
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.1e-08 65.1 252 29.8
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 5.4e-08 64.3 246 29.7
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 5.4e-08 64.3 161 33.5
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 7.0e-08 63.9 82 43.9
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.0e-08 63.9 82 43.9
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.6e-07 62.8 168 32.1
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 5.9e-07 60.8 113 35.4
DCAR_022326 Daucus carota HOM05D004189 ORTHO05D004092 1.7e-06 59.3 94 41.5
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-06 59.3 191 34.0
Solyc01g009660.3 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.7e-06 59.3 55 52.7
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 1.7e-06 59.3 55 52.7
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.9e-06 58.5 443 24.8
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 2.9e-06 58.5 79 40.5
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 3.9e-06 58.2 742 21.4
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 5.0e-06 57.8 259 28.6
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 5.0e-06 57.8 110 40.9
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 6.6e-06 57.4 106 40.6
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 8.6e-06 57.0 116 36.2


User provided reference genes

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