Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 2.2e-73 278.9 138 100.0
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 7.2e-69 263.8 138 94.2
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 4.3e-66 254.6 138 89.9
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 3.1e-64 248.4 138 87.7
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 5.9e-63 244.2 137 86.9
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 2.2e-62 242.3 137 86.1
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.1e-61 240.0 135 86.7
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 3.2e-61 238.4 134 84.3
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 3.2e-61 238.4 136 84.6
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 9.4e-61 236.9 135 85.2
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 9.4e-61 236.9 134 85.1
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.0e-59 233.4 135 84.4
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.4e-59 233.0 128 88.3
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.8e-59 232.6 136 81.6
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 2.3e-59 232.3 128 88.3
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 3.3e-58 228.4 131 84.7
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 4.4e-58 228.0 134 80.6
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 7.4e-58 227.3 136 82.4
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 7.4e-58 227.3 136 82.4
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.2e-57 225.7 134 79.1
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 2.8e-57 225.3 138 79.7
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 2.8e-57 225.3 134 81.3
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 3.7e-57 224.9 136 83.1
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 3.7e-57 224.9 136 83.1
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.7e-57 224.9 133 82.7
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 4.8e-57 224.6 134 82.1
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.1e-56 223.4 134 82.1
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.8e-56 222.6 131 84.0
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.4e-56 222.2 135 78.5
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 3.1e-56 221.9 135 80.7
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 9.1e-56 220.3 134 79.9
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 1.2e-55 219.9 135 82.2
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.2e-55 219.9 134 79.1
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 2.0e-55 219.2 133 81.2
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 3.5e-55 218.4 134 79.9
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 3.5e-55 218.4 135 77.0
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 4.5e-55 218.0 134 79.1
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 4.5e-55 218.0 132 79.5
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 7.7e-55 217.2 134 76.1
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 7.7e-55 217.2 135 80.0
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.0e-54 216.9 134 78.4
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.0e-54 216.9 134 78.4
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.0e-54 216.9 133 80.5
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.7e-54 216.1 133 79.7
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.9e-54 215.3 135 77.8
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 2.9e-54 215.3 134 79.9
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.9e-54 215.3 135 77.0
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 3.8e-54 214.9 135 80.0
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 5.0e-54 214.5 133 78.2
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 5.0e-54 214.5 134 78.4
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 5.0e-54 214.5 133 79.7
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 8.5e-54 213.8 135 77.0
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 8.5e-54 213.8 135 77.0
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 8.5e-54 213.8 134 78.4
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 1.1e-53 213.4 133 78.9
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 2.5e-53 212.2 139 74.8
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 2.5e-53 212.2 136 76.5
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 3.2e-53 211.8 134 78.4
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 7.2e-53 210.7 134 76.1
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 9.4e-53 210.3 134 76.9
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.2e-52 209.9 133 77.4
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 3.6e-52 208.4 134 72.4
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 8.0e-52 207.2 130 76.2
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 8.0e-52 207.2 138 73.2
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 8.0e-52 207.2 119 84.9
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.0e-51 206.8 134 73.9
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.0e-51 206.8 134 75.4
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.4e-51 206.5 133 75.9
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 3.0e-51 205.3 133 72.9
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 3.0e-51 205.3 131 74.8
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 6.7e-51 204.1 133 71.4
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.1e-50 203.4 136 74.3
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.6e-50 202.2 132 73.5
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 2.6e-50 202.2 135 74.1
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 2.6e-50 202.2 134 72.4
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 4.4e-50 201.4 134 73.9
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 5.7e-50 201.1 135 74.1
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 9.7e-50 200.3 132 74.2
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 2.2e-49 199.1 145 73.8
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 2.8e-49 198.7 136 71.3
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 4.8e-49 198.0 135 72.6
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 6.3e-49 197.6 134 70.1
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 2.4e-48 195.7 134 70.9
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 2.4e-48 195.7 134 70.9
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 3.1e-48 195.3 140 70.0
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 3.1e-48 195.3 140 70.0
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 3.1e-48 195.3 140 70.0
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 3.1e-48 195.3 140 70.0
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 4.1e-48 194.9 135 71.9
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 7.0e-48 194.1 134 67.9
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.2e-47 193.4 134 68.7
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 1.6e-47 193.0 134 70.1
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 2.0e-47 192.6 136 70.6
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 5.9e-47 191.0 139 66.2
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 7.7e-47 190.7 142 68.3
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.3e-46 189.9 133 69.9
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 1.5e-45 186.4 116 73.3
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 1.2e-44 183.3 132 68.2
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 2.1e-44 182.6 130 66.9
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 2.1e-44 182.6 130 66.9
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 4.7e-44 181.4 115 75.7
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.0e-43 180.3 116 73.3
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-43 179.9 115 73.0
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 1.4e-43 179.9 115 73.0
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 1.4e-43 179.9 115 73.0
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 2.3e-43 179.1 115 73.0
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 3.0e-43 178.7 109 76.1
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 4.0e-43 178.3 115 72.2
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 4.0e-43 178.3 115 72.2
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 6.8e-43 177.6 114 80.7
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 8.8e-43 177.2 115 73.0
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 2.0e-42 176.0 116 70.7
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 9.8e-42 173.7 109 72.5
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 2.8e-41 172.2 114 71.1
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 3.7e-41 171.8 108 72.2
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 4.8e-41 171.4 101 77.2
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 4.8e-41 171.4 108 74.1
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 8.3e-41 170.6 112 71.4
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 9.1e-40 167.2 142 64.8
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 2.0e-39 166.0 118 75.4
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 2.7e-39 165.6 96 76.0
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 3.0e-35 152.1 90 74.4
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 2.6e-34 149.1 129 56.6
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 4.9e-33 144.8 138 55.1
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 4.1e-32 141.7 89 74.2
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 3.8e-30 135.2 132 56.1
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.2e-28 130.2 122 52.5
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 8.0e-28 127.5 115 57.4
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 3.0e-27 125.6 74 83.8
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 4.0e-27 125.2 121 54.5
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 1.5e-26 123.2 136 52.9
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.4e-24 116.7 68 72.1
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 1.8e-24 116.3 81 76.5
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.0e-23 112.8 56 82.1
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 5.9e-23 111.3 75 77.3
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.2e-20 103.6 93 63.4
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 8.0e-20 100.9 75 65.3
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 1.8e-19 99.8 120 45.0
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 6.8e-19 97.8 70 65.7
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 6.8e-19 97.8 100 48.0
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.2e-18 97.1 60 71.7
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 1.0e-14 84.0 56 67.9
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 1.7e-14 83.2 54 74.1
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.1e-12 76.3 121 36.4
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 3.6e-12 75.5 77 51.9
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 8.1e-12 74.3 79 54.4
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 1.5e-10 70.1 141 36.9
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 8.3e-09 64.3 81 44.4


User provided reference genes

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