Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.7e-165 585.5 343 100.0
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.6e-157 559.7 343 92.4
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 9.2e-150 533.9 343 87.5
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 7.8e-149 530.8 343 86.9
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.6e-146 523.1 345 84.3
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.9e-142 509.6 345 85.8
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 2.0e-136 489.6 345 79.1
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 2.4e-134 482.6 344 77.3
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 3.2e-134 482.3 345 75.9
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.7e-133 479.2 345 80.9
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 4.6e-133 478.4 345 75.9
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.9e-132 475.3 345 75.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.9e-131 473.0 345 76.8
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 2.5e-131 472.6 345 74.8
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 7.3e-131 471.1 343 75.5
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.6e-130 469.9 345 76.5
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 2.8e-130 469.2 340 73.5
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.4e-129 466.8 337 75.7
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.8e-129 466.5 340 75.3
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.8e-129 466.5 345 72.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.4e-129 466.1 330 76.1
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 6.9e-129 464.5 330 75.8
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.0e-128 463.0 345 73.9
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.4e-128 462.2 345 75.4
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 5.8e-128 461.5 345 72.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.3e-127 460.3 345 73.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.3e-127 460.3 345 75.1
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 6.4e-127 458.0 345 73.6
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.1e-126 457.2 332 72.6
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 7.1e-126 454.5 330 75.2
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.7e-125 452.6 340 72.9
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 6.0e-125 451.4 340 71.8
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 7.9e-125 451.1 340 70.6
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.3e-124 450.3 345 72.5
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.3e-124 450.3 340 71.2
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.3e-124 450.3 340 71.2
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.7e-124 448.0 345 72.2
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.1e-123 447.2 345 71.9
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.1e-123 447.2 345 71.9
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.5e-123 446.8 342 71.6
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.5e-123 446.8 337 73.3
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 3.3e-123 445.7 345 71.0
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 9.6e-123 444.1 345 70.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.3e-122 443.7 340 72.4
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.3e-122 443.7 369 68.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-122 443.4 345 71.3
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.6e-122 443.4 345 74.5
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.8e-122 442.6 340 70.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.8e-121 439.9 328 74.7
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.8e-121 439.9 345 73.9
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.1e-121 439.1 340 72.1
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.5e-120 436.8 338 68.3
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.4e-120 435.6 319 75.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.7e-119 433.3 342 70.5
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 2.2e-119 433.0 340 67.4
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 6.4e-119 431.4 335 73.1
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 5.5e-118 428.3 345 77.1
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.6e-117 426.8 340 71.5
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 7.9e-117 424.5 319 76.2
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.0e-116 422.5 340 67.4
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 3.0e-116 422.5 345 72.8
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.3e-115 419.1 345 71.6
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.3e-115 419.1 343 73.5
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.6e-115 418.3 340 72.6
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.4e-113 413.7 345 68.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.1e-113 412.5 315 69.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 9.0e-113 411.0 340 67.1
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.6e-112 409.5 345 70.7
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.9e-111 406.0 340 65.6
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 4.9e-111 405.2 340 72.4
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 6.5e-111 404.8 341 66.3
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.2e-110 402.5 345 71.0
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 4.2e-110 402.1 340 65.0
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 9.3e-110 401.0 340 69.1
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-109 400.6 341 65.7
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.2e-109 400.6 394 59.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.7e-109 399.4 341 69.8
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 3.5e-109 399.1 337 70.0
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.6e-109 398.7 345 70.7
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 6.7e-108 394.8 274 78.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 9.7e-107 391.0 340 69.4
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 2.8e-106 389.4 345 69.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.8e-105 386.7 340 70.0
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.4e-105 386.3 341 66.6
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 4.1e-105 385.6 338 68.6
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 4.1e-105 385.6 269 74.0
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.2e-104 384.0 345 68.4
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.2e-104 384.0 345 68.4
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.5e-102 376.3 339 63.4
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.0e-100 370.9 338 63.6
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.0e-100 370.9 338 66.6
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.1e-99 367.5 345 65.8
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 3.3e-99 365.9 346 69.7
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 7.4e-99 364.8 338 65.7
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.8e-98 362.8 366 63.4
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.9e-96 355.1 342 58.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 7.7e-96 354.8 343 63.0
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 6.5e-95 351.7 339 60.5
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.4e-94 350.5 345 59.1
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.2e-93 347.4 346 65.9
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.7e-93 346.3 269 68.0
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 4.7e-93 345.5 340 64.4
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 6.7e-92 341.7 373 56.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 6.7e-92 341.7 275 72.0
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 2.0e-91 340.1 339 56.6
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 2.0e-91 340.1 248 70.2
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.6e-88 329.7 324 57.7
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.5e-87 325.1 343 56.0
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.4e-86 323.9 341 56.0
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.9e-86 323.6 338 61.5
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 7.2e-86 321.6 319 59.6
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.0e-84 317.8 345 63.2
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.4e-83 312.4 345 54.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 7.4e-83 311.6 345 59.4
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.3e-82 308.5 345 54.2
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-81 307.4 343 53.6
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.0e-79 301.2 334 54.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.4e-76 290.8 340 53.5
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.4e-76 290.8 335 54.0
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.4e-76 290.8 345 54.2
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.0e-76 289.7 340 51.2
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.0e-75 287.0 344 52.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.6e-75 286.6 348 53.2
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 2.2e-74 283.5 343 52.5
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 6.3e-74 282.0 343 52.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 6.3e-74 282.0 341 53.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 6.3e-74 282.0 341 53.1
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 5.3e-73 278.9 266 60.5
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.7e-72 276.6 344 51.5
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 7.7e-72 275.0 262 59.9
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.5e-70 270.0 346 50.6
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.8e-68 261.9 345 46.7
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 6.8e-68 261.9 344 49.7
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.5e-67 260.8 344 47.1
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.4e-67 259.2 343 49.9
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-66 256.9 340 50.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 8.3e-66 255.0 339 48.7
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.4e-65 254.2 344 49.7
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.2e-64 251.1 339 49.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 4.2e-62 242.7 343 47.5
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.0e-60 236.5 339 47.8
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 9.8e-59 231.5 302 50.3
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.7e-58 229.6 289 48.1
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 8.3e-58 228.4 349 49.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 9.2e-57 224.9 228 57.0
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.0e-56 223.8 348 39.9
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.0e-56 223.8 320 47.5
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 4.5e-56 222.6 347 47.8
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 7.8e-56 221.9 301 48.2
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.3e-55 221.1 313 47.0
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 5.2e-52 209.1 340 40.9
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 5.2e-52 209.1 272 48.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.2e-51 208.0 341 41.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 8.3e-50 201.8 185 59.5
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.1e-49 201.4 296 43.9
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 9.5e-46 188.3 345 35.1
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.0e-43 180.6 138 75.4
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.1e-41 172.9 225 49.3
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.8e-40 168.7 158 74.1
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 7.3e-38 162.2 272 41.2
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 8.1e-37 158.7 229 45.4
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.0e-36 156.4 303 41.3
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.3e-34 151.4 143 60.1
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.9e-30 137.5 321 37.7
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.3e-26 124.8 281 35.6
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 7.3e-22 109.0 145 55.2
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.2e-19 101.7 292 33.2
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.4e-17 94.0 284 31.7
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.4e-17 94.0 284 31.7
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 5.1e-15 86.3 292 37.7
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.6e-13 81.3 51 84.3
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.1e-12 78.6 104 52.9
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 2.4e-12 77.4 50 84.0
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 6.9e-12 75.9 104 51.9
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 4.3e-06 56.6 108 44.4


User provided reference genes

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