Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 5.0e-103 377.9 202 100.0
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 2.8e-45 186.0 89 96.6
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.1e-40 169.9 89 87.6
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 2.7e-40 169.5 89 87.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 8.7e-39 164.5 89 85.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 2.5e-38 162.9 89 83.1
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 3.3e-38 162.5 89 83.1
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 3.6e-37 159.1 89 80.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 6.9e-36 154.8 88 80.7
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 2.0e-35 153.3 89 79.8
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 2.6e-35 152.9 89 79.8
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.6e-35 152.9 89 79.8
Glyma.06G115600 Glycine max HOM05D001065 ORTHO05D002020 2.9e-34 149.4 108 88.9
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 6.4e-34 148.3 89 76.4
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.9e-33 146.7 89 73.0
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 2.4e-33 146.4 89 74.2
Glyma.04G247200 Glycine max HOM05D001065 ORTHO05D002020 2.4e-33 146.4 107 88.8
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 3.2e-33 146.0 89 74.2
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 7.1e-33 144.8 89 75.3
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.5e-32 142.5 89 71.9
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.5e-32 142.5 89 71.9
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 7.8e-32 141.4 88 72.7
Phvul.009G127700 Phaseolus vulgaris HOM05D001065 ORTHO05D002020 7.8e-32 141.4 109 78.0
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 7.8e-32 141.4 89 71.9
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 1.0e-31 141.0 89 70.8
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.0e-31 141.0 89 70.8
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.0e-31 141.0 89 71.9
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.3e-31 140.6 89 70.8
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.3e-31 140.6 89 70.8
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 1.7e-31 140.2 89 70.8
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.7e-31 140.2 89 71.9
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 3.9e-31 139.0 89 70.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 3.9e-31 139.0 89 69.7
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 5.1e-31 138.7 89 68.5
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 5.1e-31 138.7 89 70.8
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.5e-30 137.1 91 69.2
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.5e-30 136.3 89 67.4
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.5e-30 136.3 89 68.5
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 3.3e-30 136.0 89 67.4
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 3.3e-30 136.0 88 71.6
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 4.3e-30 135.6 85 71.8
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 4.3e-30 135.6 95 66.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 4.3e-30 135.6 89 67.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 7.3e-30 134.8 89 66.3
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 9.6e-30 134.4 89 69.7
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 9.6e-30 134.4 89 66.3
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.3e-29 134.0 92 67.4
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.3e-29 134.0 89 69.7
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.3e-29 134.0 96 67.7
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.6e-29 133.7 93 64.5
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 1.6e-29 133.7 95 68.4
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.8e-29 132.9 89 69.7
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 2.8e-29 132.9 88 67.0
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.2e-29 131.7 89 67.4
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.1e-28 131.0 89 67.4
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 1.1e-28 131.0 89 67.4
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.1e-28 131.0 89 69.7
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.4e-28 130.6 89 66.3
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 1.4e-28 130.6 92 64.1
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.8e-28 130.2 89 66.3
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 4.0e-28 129.0 93 63.4
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.0e-28 129.0 84 67.9
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.0e-28 129.0 84 69.0
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 5.3e-28 128.6 93 63.4
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 5.3e-28 128.6 89 65.2
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 6.9e-28 128.3 88 64.8
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 6.9e-28 128.3 88 69.3
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 9.0e-28 127.9 93 63.4
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 9.0e-28 127.9 84 66.7
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 9.0e-28 127.9 84 66.7
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 9.0e-28 127.9 89 64.0
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.2e-27 127.5 93 62.4
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.5e-27 127.1 89 66.3
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.5e-27 127.1 93 63.4
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.5e-27 127.1 87 64.4
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.5e-27 127.1 92 65.2
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.5e-27 127.1 93 63.4
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.5e-27 127.1 89 64.0
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 2.0e-27 126.7 93 63.4
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 2.0e-27 126.7 89 62.9
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.6e-27 126.3 93 62.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.6e-27 126.3 89 62.9
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 2.6e-27 126.3 89 65.2
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.6e-27 126.3 89 64.0
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 5.8e-27 125.2 93 61.3
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 5.8e-27 125.2 93 62.4
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 5.8e-27 125.2 86 65.1
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 5.8e-27 125.2 89 65.2
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 9.9e-27 124.4 89 66.3
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 9.9e-27 124.4 89 66.3
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.9e-26 122.9 92 62.0
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.8e-26 122.5 84 64.3
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 4.9e-26 122.1 89 65.2
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 8.4e-26 121.3 89 57.3
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 8.4e-26 121.3 89 64.0
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.1e-25 120.9 92 62.0
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.2e-25 119.4 89 64.0
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.2e-25 119.4 89 59.6
Glyma.07G231300 Glycine max HOM05D001065 ORTHO05D002020 2.1e-24 116.7 108 75.0
VMungo1309G1139 Vigna mungo HOM05D001065 ORTHO05D002020 2.1e-21 106.7 109 64.2
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 4.8e-21 105.5 67 65.7
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-20 104.0 87 52.9
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.1e-20 102.8 96 50.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.0e-20 102.4 87 51.7
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-19 100.5 87 51.7
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-19 100.5 87 51.7
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-19 100.5 87 51.7
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 5.8e-19 98.6 87 50.6
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-18 97.8 87 51.7
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-18 96.7 87 51.7
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 8.4e-18 94.7 70 61.4
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.4e-18 94.7 82 51.2
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-17 94.4 87 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 3.2e-17 92.8 88 47.7
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.5e-17 92.0 59 71.2
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.7e-16 89.7 87 46.0
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 7.9e-16 88.2 85 47.1
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.0e-15 87.8 84 46.4
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 8.7e-15 84.7 51 70.6
Lalb_Chr08g0241261 Lupinus albus HOM05D001065 ORTHO05D002020 1.5e-14 84.0 111 64.0
Lalb_Chr11g0066081 Lupinus albus HOM05D001065 ORTHO05D002020 1.9e-14 83.6 128 56.2
Ca_16578_v3 Cicer arietinum L. HOM05D001065 ORTHO05D002020 4.3e-14 82.4 62 69.4
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-13 80.5 72 50.0
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.1e-13 80.1 87 43.7
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 8.2e-13 78.2 56 66.1
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.1e-12 77.8 49 71.4
Lj1g0001950 Lotus japonicus HOM05D001065 ORTHO05D002020 1.4e-12 77.4 110 62.7
Medtr3g088480 Medicago truncatula HOM05D001065 ORTHO05D002020 1.8e-12 77.0 120 56.7
CSS0004246 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 4.5e-11 72.4 109 54.1
CSS0047329 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 4.5e-11 72.4 109 54.1
Prupe.1G492600 Prunus persica HOM05D001065 ORTHO05D002020 1.7e-10 70.5 109 57.8
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 2.2e-10 70.1 88 45.5
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 2.2e-10 70.1 88 45.5
Psat5g086040 Pisum sativum HOM05D001065 ORTHO05D002020 5.0e-10 68.9 55 65.5
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 8.4e-10 68.2 53 56.6
MD00G1030000 Malus domestica HOM05D001065 ORTHO05D002020 8.4e-10 68.2 124 50.8
TPR.G13468 Trifolium pratense HOM05D001065 ORTHO05D002020 4.2e-09 65.9 51 64.7
Actinidia15228 Actinidia chinensis HOM05D001065 ORTHO05D002020 5.5e-09 65.5 108 48.1
arahy.Tifrunner.gnm1.ann1.8ZSB7P Arachis hypogaea HOM05D001065 ORTHO05D002020 1.2e-08 64.3 41 73.2
QL09p033728 Quercus lobata HOM05D001065 ORTHO05D002020 1.2e-08 64.3 103 46.6
arahy.Tifrunner.gnm1.ann1.D2JSQE Arachis hypogaea HOM05D001065 ORTHO05D002020 1.6e-08 63.9 44 70.5
CSS0034416 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 2.1e-08 63.5 40 75.0
CSS0037838 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 2.1e-08 63.5 40 75.0
TAR628G1385 Trochodendron aralioides HOM05D001065 ORTHO05D002020 4.6e-08 62.4 40 75.0
Hma1.2p1_0542F.1_g174880 Hydrangea macrophylla HOM05D001065 ORTHO05D002020 7.9e-08 61.6 47 63.8
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 7.9e-08 61.6 73 49.3
Actinidia21301 Actinidia chinensis HOM05D001065 ORTHO05D002020 1.3e-07 60.8 112 43.8
Cfa018563 Carpinus fangiana HOM05D001065 ORTHO05D002020 1.3e-07 60.8 101 46.5
Haze_17517 Corylus avellana HOM05D001065 ORTHO05D002020 2.3e-07 60.1 101 46.5
Rhsim06G0088100 Rhododendron simsii HOM05D001065 ORTHO05D002020 2.3e-07 60.1 45 64.4
Eucgr.F03812 Eucalyptus grandis HOM05D001065 ORTHO05D002020 3.0e-07 59.7 39 74.4
Nn5g28395 Nelumbo nucifera HOM05D001065 ORTHO05D002020 6.7e-07 58.5 40 72.5
Nn5g28410 Nelumbo nucifera HOM05D001065 ORTHO05D002020 6.7e-07 58.5 40 72.5
Sed0006418 Sechium edule HOM05D001065 ORTHO05D002020 1.5e-06 57.4 102 51.0
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 3.3e-06 56.2 89 33.7
FvH4_2g27500 Fragaria vesca HOM05D001065 ORTHO05D002020 3.3e-06 56.2 112 50.0
FAN15G3219 Fragaria x ananassa HOM05D001065 ORTHO05D002020 3.3e-06 56.2 112 50.0
Gohir.D05G271100 Gossypium hirsutum HOM05D001065 ORTHO05D002020 3.3e-06 56.2 39 66.7
Gorai.009G284000 Gossypium raimondii HOM05D001065 ORTHO05D002020 3.3e-06 56.2 39 66.7
Duzib116G0856 Durio zibethinus HOM05D001065 ORTHO05D002020 5.7e-06 55.5 39 66.7
Potri.002G080600 Populus trichocarpa HOM05D001065 ORTHO05D002020 7.4e-06 55.1 57 56.1
Sed0027165 Sechium edule HOM05D001065 ORTHO05D002020 7.4e-06 55.1 107 41.1
TWI60G0950 Tripterygium wilfordii HOM05D001065 ORTHO05D002020 7.4e-06 55.1 126 35.7
DCAR_003565 Daucus carota HOM05D001065 ORTHO05D002020 9.7e-06 54.7 115 34.8


User provided reference genes

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