Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 3.6e-266 921.0 466 100.0
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 7.1e-254 880.2 466 94.2
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 2.3e-252 875.2 466 94.2
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 4.1e-233 811.2 472 87.1
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 5.9e-232 807.4 473 86.3
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 7.7e-232 807.0 469 87.2
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 1.3e-231 806.2 466 86.9
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 1.7e-231 805.8 466 86.7
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 1.1e-230 803.1 468 85.9
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 7.2e-230 800.4 468 85.7
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 9.7e-211 736.9 470 77.4
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 9.7e-211 736.9 469 77.0
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 2.2e-210 735.7 469 78.5
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 4.8e-210 734.6 471 76.4
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 6.3e-210 734.2 468 76.9
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 8.3e-210 733.8 468 76.9
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.1e-209 733.4 468 76.9
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 1.8e-209 732.6 470 77.2
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 1.8e-209 732.6 469 76.8
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 2.4e-209 732.3 469 77.4
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 3.1e-209 731.9 469 77.6
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 7.0e-209 730.7 469 77.4
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 9.1e-209 730.3 472 76.5
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 9.1e-209 730.3 468 76.7
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 9.1e-209 730.3 469 77.2
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 2.0e-208 729.2 468 75.9
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.0e-208 729.2 468 77.1
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.5e-208 728.4 470 76.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 3.5e-208 728.4 469 75.9
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 7.7e-208 727.2 469 76.1
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 7.7e-208 727.2 470 76.0
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.3e-207 726.5 470 75.5
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 1.3e-207 726.5 469 76.1
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.3e-207 726.5 470 75.7
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 1.3e-207 726.5 470 77.2
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.9e-207 725.3 469 76.5
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 5.0e-207 724.5 469 77.8
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 8.5e-207 723.8 468 75.9
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 1.1e-206 723.4 468 76.7
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.1e-206 723.4 468 76.5
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 1.1e-206 723.4 474 76.2
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 1.5e-206 723.0 468 76.7
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 2.5e-206 722.2 472 75.2
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 3.2e-206 721.8 469 76.5
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 9.4e-206 720.3 469 76.8
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 9.4e-206 720.3 468 76.5
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 9.4e-206 720.3 472 75.2
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 1.2e-205 719.9 493 74.2
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.6e-205 719.5 470 77.0
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 1.6e-205 719.5 469 75.7
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 2.7e-205 718.8 469 76.1
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 2.7e-205 718.8 468 75.4
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.7e-205 718.8 468 75.6
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 2.7e-205 718.8 470 76.6
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 3.6e-205 718.4 467 76.4
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 6.1e-205 717.6 469 75.3
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 1.0e-204 716.8 468 76.3
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.8e-204 716.1 469 75.3
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 3.0e-204 715.3 468 75.2
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 4.0e-204 714.9 469 75.3
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 1.2e-203 713.4 471 75.2
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 2.0e-203 712.6 469 76.1
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 2.0e-203 712.6 473 74.4
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.6e-203 712.2 510 70.6
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.6e-203 712.2 510 70.8
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.6e-203 712.2 510 70.4
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 2.6e-203 712.2 472 73.5
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 2.6e-203 712.2 472 73.5
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.4e-203 711.8 510 70.2
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 7.5e-203 710.7 469 75.3
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 9.8e-203 710.3 449 77.3
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 1.3e-202 709.9 512 69.7
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 1.7e-202 709.5 470 74.9
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 2.2e-202 709.1 467 74.7
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 2.8e-202 708.8 469 74.4
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 3.7e-202 708.4 470 74.5
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 8.3e-202 707.2 443 77.7
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 8.3e-202 707.2 469 74.8
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 8.3e-202 707.2 498 71.7
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 1.1e-201 706.8 469 74.8
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 1.1e-201 706.8 469 74.8
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.4e-201 706.4 472 74.6
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.8e-201 706.1 465 74.0
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 3.1e-201 705.3 470 74.0
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 4.1e-201 704.9 460 75.9
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 5.4e-201 704.5 470 74.9
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 5.4e-201 704.5 473 73.8
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 7.0e-201 704.1 472 74.4
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 7.0e-201 704.1 472 74.4
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 9.1e-201 703.7 468 74.8
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.2e-200 703.4 470 74.0
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 1.2e-200 703.4 472 73.7
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 1.6e-200 703.0 470 74.3
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 1.6e-200 703.0 472 74.2
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 2.0e-200 702.6 465 73.5
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 2.7e-200 702.2 472 73.7
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 3.5e-200 701.8 472 73.7
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 3.5e-200 701.8 469 74.4
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 7.7e-200 700.7 438 78.1
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 1.0e-199 700.3 469 73.6
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 1.3e-199 699.9 471 73.5
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 2.3e-199 699.1 470 73.8
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 2.3e-199 699.1 470 73.4
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.3e-199 699.1 468 74.6
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.3e-199 699.1 463 74.5
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 3.8e-199 698.4 472 73.1
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 3.8e-199 698.4 465 74.2
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 3.8e-199 698.4 470 73.4
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 1.1e-198 696.8 471 73.7
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.5e-198 696.4 471 74.1
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 9.5e-198 693.7 468 72.9
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 1.2e-197 693.3 465 73.5
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 6.1e-197 691.0 468 73.7
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 6.1e-197 691.0 468 72.4
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 8.0e-197 690.6 462 74.0
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 1.0e-196 690.3 470 73.0
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 2.3e-196 689.1 492 70.9
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 3.0e-196 688.7 466 72.7
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 4.0e-196 688.3 447 74.9
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 4.0e-196 688.3 469 73.3
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 2.0e-195 686.0 453 75.7
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 9.8e-195 683.7 468 73.5
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 1.3e-194 683.3 485 70.9
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.3e-194 683.3 438 76.0
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 2.2e-194 682.6 469 72.5
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 2.2e-194 682.6 469 72.5
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 2.2e-194 682.6 469 72.5
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 2.8e-194 682.2 470 73.0
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 7.0e-193 677.6 466 73.2
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.2e-193 677.2 447 74.3
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.6e-192 676.4 462 72.9
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 3.3e-190 668.7 468 69.7
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 9.5e-190 667.2 426 75.4
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.6e-187 659.1 451 71.4
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.9e-186 655.6 468 71.4
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 1.4e-185 653.3 489 67.9
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 8.9e-180 634.0 377 80.9
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 4.9e-178 628.2 378 79.1
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 7.1e-177 624.4 444 69.1
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 9.2e-177 624.0 473 66.0
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.0e-175 620.5 417 71.7
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 3.0e-175 619.0 433 70.2
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 6.6e-175 617.8 412 73.1
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 3.3e-174 615.5 434 68.0
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 5.2e-172 608.2 432 70.4
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.0e-167 594.0 468 66.9
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.5e-163 580.1 424 66.5
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 3.8e-162 575.5 373 75.6
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.4e-161 573.5 384 72.1
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 7.6e-155 551.2 406 64.8
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 5.4e-153 545.0 319 81.8
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.7e-152 542.7 329 79.9
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 1.0e-151 540.8 331 78.9
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 4.0e-148 528.9 480 60.6
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 1.2e-139 500.7 417 59.7
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 6.7e-135 485.0 293 85.0
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 6.3e-125 451.8 295 73.9
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 1.1e-121 441.0 350 61.1
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 3.7e-117 426.0 278 73.7
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 4.5e-115 419.1 294 69.7
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.7e-98 364.0 259 72.2
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.8e-87 327.4 189 82.0
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 4.0e-87 326.2 190 82.6
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 6.1e-80 302.4 179 78.8
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 1.3e-77 294.7 250 62.0
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 1.8e-76 290.8 199 73.9
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.0e-74 283.5 225 65.8
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 3.4e-62 243.4 223 59.2
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.1e-59 234.2 409 39.9
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 8.6e-58 228.8 363 36.4
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 9.5e-57 225.3 136 79.4
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 1.4e-55 221.5 158 70.3
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 3.4e-46 190.3 155 63.9
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 5.5e-28 129.8 71 84.5
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.3e-25 120.2 118 56.8
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 9.6e-25 119.0 75 76.0
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 1.4e-20 105.1 73 69.9
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 2.1e-19 101.3 73 65.8
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 1.3e-13 82.0 57 73.7
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 1.3e-10 72.0 168 37.5
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 5.1e-10 70.1 57 63.2
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 5.1e-10 70.1 57 63.2
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 6.7e-10 69.7 37 73.0
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 9.7e-09 65.9 37 70.3
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.1e-07 60.8 50 68.0
CSS0042870 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.4e-06 57.4 48 66.7


User provided reference genes

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