Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G088900 Glycine max HOM05D008622 ORTHO05D010757 1.2e-36 156.0 76 100.0
Peaxi162Scf00110g00044 Petunia axillaris HOM05D008622 ORTHO05D010757 1.4e-26 122.5 76 77.6
Gohir.1Z050166 Gossypium hirsutum HOM05D008622 ORTHO05D010757 7.0e-26 120.2 76 76.3
Nn020s41492 Nelumbo nucifera HOM05D008622 ORTHO05D010757 7.0e-26 120.2 69 81.2
PSO548G0027 Papaver somniferum HOM05D008622 ORTHO05D010757 9.2e-26 119.8 74 78.4
CAN.G612.10 Capsicum annuum HOM05D008622 ORTHO05D010757 1.6e-25 119.0 75 76.0
CAN.G877.8 Capsicum annuum HOM05D008622 ORTHO05D010757 1.6e-25 119.0 75 76.0
LjContig00489g0025793 Lotus japonicus HOM05D008622 ORTHO05D010757 7.8e-25 116.7 75 76.0
LjContig00318g0003846 Lotus japonicus HOM05D008622 ORTHO05D010757 3.0e-24 114.8 65 81.5
PGR111G0016 Punica granatum HOM05D008622 ORTHO05D010757 6.6e-24 113.6 76 75.0
Sed0001678 Sechium edule HOM05D008622 ORTHO05D010757 1.5e-23 112.5 68 73.5
Sed0011032 Sechium edule HOM05D008622 ORTHO05D010757 1.5e-23 112.5 68 73.5
Sed0018360 Sechium edule HOM05D008622 ORTHO05D010757 1.5e-23 112.5 68 73.5
C06p21400 Brassica napus HOM05D008622 ORTHO05D010757 7.3e-23 110.2 75 72.0
BolSC37t60776H Brassica oleracea HOM05D008622 ORTHO05D010757 7.3e-23 110.2 75 72.0
BolSC45t60930H Brassica oleracea HOM05D008622 ORTHO05D010757 7.3e-23 110.2 75 72.0
BraSC25t45888Z Brassica rapa HOM05D008622 ORTHO05D010757 7.3e-23 110.2 75 72.0
BraSC59t46518Z Brassica rapa HOM05D008622 ORTHO05D010757 7.3e-23 110.2 75 72.0
DCAR_032466 Daucus carota HOM05D008622 ORTHO05D010757 2.1e-22 108.6 64 75.0
HanXRQChr00c0496g0575161 Helianthus annuus HOM05D008622 ORTHO05D010757 1.1e-21 106.3 58 81.0
MELO3C028501.2 Cucumis melo HOM05D008622 ORTHO05D010757 3.1e-21 104.8 60 76.7
CARHR281850 Cardamine hirsuta HOM05D008622 ORTHO05D010757 4.0e-21 104.4 65 72.3
Gohir.A12G078500 Gossypium hirsutum HOM05D008622 ORTHO05D010757 8.9e-21 103.2 67 73.1
Migut.H01168 Erythranthe guttata HOM05D008622 ORTHO05D010757 1.5e-20 102.4 66 72.7
CiPaw.06G085000 Carya illinoinensis HOM05D008622 ORTHO05D010757 3.4e-20 101.3 68 69.1
Thhalv10028241m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 9.9e-20 99.8 63 73.0
Gohir.D08G095680 Gossypium hirsutum HOM05D008622 ORTHO05D010757 1.7e-19 99.0 64 73.4
Gorai.012G044100 Gossypium raimondii HOM05D008622 ORTHO05D010757 1.7e-19 99.0 58 75.9
Gorai.001G180700 Gossypium raimondii HOM05D008622 ORTHO05D010757 2.9e-19 98.2 62 75.8
ATCG00050 Arabidopsis thaliana HOM05D008622 ORTHO05D010757 1.4e-18 95.9 65 66.2
Gohir.D06G105260 Gossypium hirsutum HOM05D008622 ORTHO05D010757 2.1e-17 92.0 62 71.0
Glyma.15G248550 Glycine max HOM05D008622 ORTHO05D010757 6.6e-16 87.0 46 87.0
Gorai.003G055400 Gossypium raimondii HOM05D008622 ORTHO05D010757 3.3e-15 84.7 47 78.7
CiPaw.01G059700 Carya illinoinensis HOM05D008622 ORTHO05D010757 7.3e-15 83.6 59 67.8
Thhalv10001859m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 9.5e-15 83.2 49 75.5
BolSC44t60843H Brassica oleracea HOM05D008622 ORTHO05D010757 2.4e-13 78.6 63 58.7
BolSC45t60884H Brassica oleracea HOM05D008622 ORTHO05D010757 2.4e-13 78.6 63 58.7
BolSC46t60979H Brassica oleracea HOM05D008622 ORTHO05D010757 2.4e-13 78.6 63 58.7
BolSC49t61205H Brassica oleracea HOM05D008622 ORTHO05D010757 3.1e-13 78.2 45 77.8
Nitab4.5_0016174g0030 Nicotiana tabacum HOM05D001325 ORTHO05D001540 4.0e-13 77.8 60 63.3
Sed0025419 Sechium edule HOM05D008622 ORTHO05D010757 6.8e-13 77.0 60 58.3
BolSC29t60522H Brassica oleracea HOM05D008622 ORTHO05D010757 1.2e-12 76.3 46 73.9
Solyc02g011995.1 Solanum lycopersicum HOM05D008622 ORTHO05D010757 9.9e-12 73.2 53 67.9
Nitab4.5_0004864g0050 Nicotiana tabacum HOM05D000540 ORTHO05D000681 1.9e-10 68.9 40 80.0
ClCG00G002380 Citrullus lanatus HOM05D008622 ORTHO05D010757 7.1e-10 67.0 36 80.6
MCO08G152 Micromonas commoda HOM05D003175 ORTHO05D010757 4.6e-09 64.3 58 46.6
Cre12.g494450 Chlamydomonas reinhardtii HOM05D003175 ORTHO05D010757 6.0e-09 63.9 62 43.5
Potri.013G128200 Populus trichocarpa HOM05D003175 ORTHO05D003591 2.3e-08 62.0 67 46.3
Sabra13G0107100 Salix brachista HOM05D003175 ORTHO05D003591 2.3e-08 62.0 67 46.3
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 2.5e-07 58.5 65 43.1
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 2.5e-07 58.5 65 43.1
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 3.3e-07 58.2 65 43.1
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 3.3e-07 58.2 65 43.1
A01p03870 Brassica napus HOM05D003175 ORTHO05D003591 3.3e-07 58.2 65 43.1
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 3.3e-07 58.2 65 43.1
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 3.3e-07 58.2 65 43.1
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 3.3e-07 58.2 65 43.1
Nn4g25758 Nelumbo nucifera HOM05D008622 ORTHO05D010757 5.6e-07 57.4 40 70.0
SMO119G0404 Selaginella moellendorffii HOM05D003175 ORTHO05D003591 5.6e-07 57.4 66 45.5
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 7.3e-07 57.0 65 41.5
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 9.6e-07 56.6 65 43.1
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 1.2e-06 56.2 65 43.1
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 44.6
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 44.6
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 47.7
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 44.6
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 44.6
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 44.6
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 44.6
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 44.6
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.1e-06 55.5 65 41.5
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 2.1e-06 55.5 65 44.6
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 2.1e-06 55.5 65 44.6
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 2.1e-06 55.5 65 43.1
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 2.8e-06 55.1 65 40.0
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 2.8e-06 55.1 65 43.1
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 44.6
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 44.6
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 3.6e-06 54.7 65 43.1
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 4.7e-06 54.3 65 40.0
PGR102G2971 Punica granatum HOM05D003175 ORTHO05D003591 4.7e-06 54.3 64 43.8
Sabra04G0148100 Salix brachista HOM05D003175 ORTHO05D003591 4.7e-06 54.3 65 43.1
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 4.7e-06 54.3 65 40.0
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 4.7e-06 54.3 65 40.0
FAN26G0002 Fragaria x ananassa HOM05D003175 ORTHO05D003591 6.2e-06 53.9 65 41.5
FAN26G2348 Fragaria x ananassa HOM05D003175 ORTHO05D003591 6.2e-06 53.9 65 41.5
FAN28G0810 Fragaria x ananassa HOM05D003175 ORTHO05D003591 6.2e-06 53.9 65 41.5
MD15G1209200 Malus domestica HOM05D003175 ORTHO05D003591 6.2e-06 53.9 65 41.5
PSO384G0269 Papaver somniferum HOM05D003175 ORTHO05D003591 6.2e-06 53.9 65 43.1
PSO384G5082 Papaver somniferum HOM05D003175 ORTHO05D003591 6.2e-06 53.9 65 43.1
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 6.2e-06 53.9 65 41.5
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 6.2e-06 53.9 65 41.5
AUR62003470 Chenopodium quinoa HOM05D003175 ORTHO05D003591 8.1e-06 53.5 63 39.7
AUR62017777 Chenopodium quinoa HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 40.0
Cc06_g11550 Coffea canephora HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 41.5
Dinv42332 Davidia involucrata HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 41.5
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 43.1
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 43.1
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 43.1
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 43.1
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 43.1
Lalb_Chr07g0180911 Lupinus albus HOM05D003175 ORTHO05D003591 8.1e-06 53.5 74 33.8
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 41.5
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 41.5
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 41.5
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 41.5
PSO017G4091 Papaver somniferum HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 46.2
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 41.5
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 8.1e-06 53.5 65 43.1


User provided reference genes

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