Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1781.1 886 100.0
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1639.4 887 92.9
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 0.0e+00 1423.7 886 80.7
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 0.0e+00 1315.4 887 75.9
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1281.5 887 74.0
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1277.7 887 73.5
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 0.0e+00 1230.3 889 71.2
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1219.9 889 71.8
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1216.1 888 70.9
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1216.1 888 70.9
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1155.6 831 71.0
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 0.0e+00 1135.6 888 67.0
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 6.7e-293 1010.7 938 59.4
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 4.6e-286 988.0 946 58.9
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.3e-252 875.5 889 54.0
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.0e-248 864.0 888 53.3
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 2.9e-248 862.4 896 54.0
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.1e-247 860.5 890 53.7
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.0e-245 852.0 890 53.9
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 5.3e-242 841.6 899 53.5
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 9.4e-239 830.9 896 51.7
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.0e-237 827.4 891 52.3
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.0e-237 825.9 897 52.3
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 8.8e-237 824.3 893 51.8
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 3.4e-236 822.4 893 51.7
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 5.7e-236 821.6 893 51.7
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.9e-233 811.6 917 50.6
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.3e-232 810.4 909 50.9
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.9e-232 809.3 897 51.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.5e-231 807.0 897 51.1
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.5e-231 806.2 898 50.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.6e-230 803.5 894 51.2
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.8e-229 800.0 883 51.1
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 5.2e-229 798.5 897 51.1
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.2e-228 797.3 889 51.4
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 5.4e-226 788.5 897 50.3
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 3.3e-223 779.2 897 49.8
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 2.6e-220 769.6 894 51.0
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 7.5e-220 768.1 894 50.8
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.9e-219 766.1 895 48.3
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.4e-218 763.1 894 50.8
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 9.2e-218 761.1 906 49.1
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-215 753.1 897 50.3
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.9e-211 738.8 901 48.6
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.5e-207 726.5 874 47.0
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.3e-203 714.1 938 44.8
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.7e-203 713.8 908 46.3
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.4e-202 709.9 897 47.8
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-200 704.1 879 48.1
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.6e-198 696.0 914 45.7
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.0e-197 692.6 914 45.5
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.4e-194 683.3 888 46.2
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 4.1e-194 682.6 888 45.9
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 5.4e-194 682.2 868 46.1
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.6e-193 680.6 892 45.9
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 2.7e-193 679.9 891 44.9
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-192 677.9 875 47.1
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.3e-192 676.8 866 46.2
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.9e-191 673.7 898 44.3
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 4.3e-191 672.5 923 45.6
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 7.3e-191 671.8 914 44.2
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.6e-190 670.6 901 45.3
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.1e-190 670.2 892 44.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 2.1e-190 670.2 888 45.6
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 2.8e-190 669.8 897 44.4
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.7e-190 669.1 914 44.1
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.2e-190 668.7 761 50.5
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 6.9e-189 665.2 884 44.2
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 3.4e-188 662.9 871 45.8
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 3.4e-188 662.9 872 45.0
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 4.4e-188 662.5 895 43.9
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.8e-187 659.4 908 43.7
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 6.4e-187 658.7 865 45.0
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 6.4e-187 658.7 866 45.0
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.9e-186 657.1 876 45.7
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.9e-186 657.1 876 45.7
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.2e-186 656.0 890 43.1
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 6.6e-184 648.7 893 43.8
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 8.7e-184 648.3 869 44.2
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-183 647.9 755 50.9
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.5e-183 647.5 897 44.5
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.9e-183 647.1 812 45.1
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 5.6e-183 645.6 889 45.2
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.1e-181 641.3 868 44.5
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 1.8e-181 640.6 907 42.9
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.9e-179 633.3 894 43.7
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 3.8e-179 632.9 869 44.9
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.4e-178 630.9 896 42.0
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.6e-177 627.5 779 48.8
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 6.0e-177 625.5 867 44.5
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 3.9e-176 622.9 893 41.8
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 6.7e-176 622.1 876 43.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 6.7e-176 622.1 876 43.5
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.7e-174 616.3 984 41.0
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 3.2e-170 603.2 604 54.1
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.2e-169 601.3 915 41.1
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.6e-169 600.9 694 50.4
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 3.9e-168 596.3 938 40.3
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 5.6e-167 592.4 890 42.5
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 5.6e-167 592.4 655 51.8
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 6.2e-166 589.0 850 43.5
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.2e-164 584.7 569 56.9
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 7.4e-159 565.5 873 42.7
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.9e-155 553.5 793 43.0
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.0e-152 545.0 752 44.4
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.1e-151 541.6 877 39.9
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 8.2e-150 535.4 901 37.5
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.6e-145 520.0 608 47.5
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.0e-143 514.2 723 42.5
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.7e-139 501.1 591 49.4
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 8.2e-134 482.3 685 43.4
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.5e-130 471.5 710 41.1
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 2.4e-125 454.1 632 44.0
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.7e-124 450.7 906 37.5
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 8.8e-120 435.6 588 44.7
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.1e-113 414.5 348 64.4
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 6.1e-113 412.9 532 48.1
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.6e-107 392.5 547 45.3
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 7.5e-95 352.8 371 49.3
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 1.3e-91 342.0 252 70.2
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.2e-87 328.9 572 36.7
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 1.7e-86 325.1 674 34.4
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.4e-85 322.0 997 27.7
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.9e-83 313.9 386 47.9
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 4.7e-81 307.0 519 39.5
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.4e-80 305.4 666 33.8
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.3e-78 298.9 314 53.5
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.0e-75 289.3 194 73.2
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 6.4e-70 270.0 164 84.8
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.4e-69 268.9 491 39.5
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 1.4e-69 268.9 1075 25.9
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.1e-66 259.2 525 34.5
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 2.5e-66 258.1 661 29.2
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.8e-65 254.6 222 62.6
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.2e-63 249.2 169 77.5
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.1e-61 242.7 164 77.4
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 9.3e-61 239.6 153 83.0
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 1.6e-60 238.8 153 83.0
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.8e-59 235.3 205 62.4
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.2e-54 218.4 153 76.5
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 2.5e-53 214.9 188 62.2
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.3e-50 204.5 309 42.1
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.3e-48 197.2 176 58.5
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 2.0e-47 195.3 189 57.1
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-46 193.0 221 49.3
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 8.4e-46 189.9 123 78.9
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.1e-45 189.5 162 60.5
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 3.2e-45 188.0 123 78.0
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 4.8e-41 174.1 182 54.9
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.4e-40 172.6 118 80.5
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 6.9e-40 170.2 153 62.1
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 9.0e-40 169.9 467 31.7
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 3.2e-37 161.4 200 48.0
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.5e-34 152.5 146 58.2
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 2.2e-33 148.7 122 62.3
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 3.7e-33 147.9 103 65.0
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 9.4e-29 133.3 219 35.2
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 2.7e-28 131.7 114 55.3
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.7e-28 131.7 293 30.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 6.1e-28 130.6 97 66.0
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-27 129.8 96 66.7
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 3.9e-27 127.9 697 22.1
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 8.2e-25 120.2 92 66.3
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 7.0e-24 117.1 582 23.0
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.2e-21 107.1 90 57.8
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 6.1e-20 104.0 68 72.1
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 5.7e-18 97.4 334 24.0
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.8e-11 75.9 200 32.0
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 2.3e-11 75.5 74 55.4
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 3.0e-11 75.1 58 70.7
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.0e-11 75.1 61 63.9
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.4e-10 71.6 84 47.6
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 7.5e-10 70.5 241 29.9
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 1.7e-09 69.3 143 31.5
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.8e-08 65.9 49 61.2
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.4e-08 65.5 90 48.9
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.0e-08 63.9 56 58.9
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.0e-07 62.4 157 28.7
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.9e-07 60.8 53 60.4


User provided reference genes

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