Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.4e-125 453.0 238 100.0
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 1.6e-113 412.9 240 91.7
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 1.7e-105 386.3 240 85.0
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 3.8e-102 375.2 242 83.1
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.6e-95 352.4 250 77.6
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 2.2e-94 349.4 244 77.0
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 2.9e-94 349.0 244 77.0
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 6.1e-92 341.3 245 75.9
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.4e-91 340.1 251 74.5
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 4.4e-90 335.1 250 73.2
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 9.7e-90 334.0 250 73.6
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.3e-89 333.6 250 76.0
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 7.7e-87 324.3 244 74.6
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 9.7e-82 307.4 247 68.4
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 5.3e-80 301.6 247 67.2
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 7.7e-79 297.7 247 66.0
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 3.8e-78 295.4 249 66.7
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 8.5e-78 294.3 224 70.5
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.1e-77 293.9 248 66.1
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.2e-77 292.4 247 64.8
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.2e-77 292.4 225 69.3
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 5.5e-77 291.6 243 64.6
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 5.5e-77 291.6 247 64.8
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 5.5e-77 291.6 246 64.6
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 7.2e-77 291.2 241 66.8
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.2e-76 290.4 233 67.4
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.2e-76 290.4 221 69.7
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 2.7e-76 289.3 243 65.8
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.7e-76 289.3 247 64.0
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 4.7e-76 288.5 250 64.0
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 8.0e-76 287.7 225 70.7
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.3e-75 286.2 245 64.1
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 2.3e-75 286.2 227 67.8
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.5e-74 283.5 247 64.4
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 5.7e-74 281.6 221 68.8
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 9.8e-74 280.8 250 62.4
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.7e-73 280.0 222 67.1
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 2.8e-73 279.3 221 66.1
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 2.8e-73 279.3 244 63.1
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 3.7e-73 278.9 224 67.9
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.1e-72 277.3 230 65.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 2.4e-72 276.2 220 67.3
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 7.0e-72 274.6 248 62.1
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 3.5e-71 272.3 245 61.2
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 5.9e-71 271.6 222 64.4
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.1e-69 267.3 221 63.3
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.1e-69 267.3 222 66.2
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 2.5e-69 266.2 216 64.8
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 3.3e-69 265.8 226 64.2
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 4.2e-69 265.4 247 60.3
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 5.5e-69 265.0 222 63.5
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 7.2e-69 264.6 221 65.2
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.6e-68 263.5 222 63.1
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.6e-68 263.5 229 63.8
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 1.8e-67 260.0 225 63.1
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 1.8e-67 260.0 225 63.6
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 2.3e-67 259.6 247 60.7
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 4.0e-67 258.8 227 63.4
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 2.0e-66 256.5 240 57.9
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 2.6e-66 256.1 220 64.1
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 4.4e-66 255.4 221 62.0
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 4.4e-66 255.4 232 62.1
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 9.8e-66 254.2 224 63.8
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.7e-65 253.4 212 64.2
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 1.4e-64 250.4 228 60.5
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 3.1e-64 249.2 229 61.1
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 4.1e-64 248.8 232 59.9
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 7.0e-64 248.1 231 61.5
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 9.2e-64 247.7 254 53.1
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 9.2e-64 247.7 182 68.7
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 1.2e-63 247.3 246 57.7
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 2.0e-63 246.5 227 62.1
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.7e-63 246.1 251 53.8
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 3.5e-63 245.7 228 57.5
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.5e-63 245.7 219 59.8
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.5e-63 245.4 219 59.8
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 5.9e-63 245.0 211 63.5
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 7.8e-63 244.6 251 53.4
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 7.8e-63 244.6 211 64.0
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 7.8e-63 244.6 231 61.5
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.7e-62 243.4 244 54.1
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 3.8e-62 242.3 245 57.6
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 3.8e-62 242.3 245 57.6
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 3.8e-62 242.3 243 57.2
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 6.6e-62 241.5 254 53.5
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 8.6e-62 241.1 253 53.0
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 8.6e-62 241.1 241 58.5
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 8.6e-62 241.1 247 57.5
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.1e-61 240.7 223 57.8
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.5e-61 239.6 234 62.4
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 4.3e-61 238.8 254 52.4
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 7.3e-61 238.0 228 58.3
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.6e-60 236.9 246 54.9
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 1.0e-59 234.2 248 53.2
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 1.0e-59 234.2 248 53.2
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 4.0e-59 232.3 254 52.8
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 3.4e-58 229.2 213 59.2
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 3.4e-58 229.2 248 56.5
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 7.5e-58 228.0 245 52.2
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 9.8e-58 227.6 229 56.8
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 1.7e-57 226.9 254 52.4
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 4.9e-57 225.3 220 53.6
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 5.4e-56 221.9 243 56.0
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 3.9e-54 215.7 255 50.2
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.2e-52 210.7 188 60.1
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 9.8e-50 201.1 224 52.2
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 1.7e-49 200.3 223 51.6
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 4.9e-49 198.7 224 52.2
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 6.4e-49 198.4 223 51.1
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 6.4e-49 198.4 223 51.1
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 8.3e-49 198.0 249 48.6
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 2.4e-48 196.4 133 75.2
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.7e-41 173.7 226 49.1
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 4.9e-41 172.2 153 60.1
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 2.4e-35 153.3 123 60.2
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.1e-32 144.4 133 58.6
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 3.4e-26 122.9 221 40.7
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 1.9e-24 117.1 121 55.4
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.2e-23 114.4 219 36.1
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 3.5e-23 112.8 179 42.5
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 7.8e-23 111.7 75 74.7
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 3.9e-22 109.4 79 77.2
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 3.4e-18 96.3 87 56.3
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 6.0e-15 85.5 62 62.9
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 6.0e-15 85.5 148 41.9
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.1e-13 81.3 117 44.4
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.6e-12 77.4 115 41.7
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 6.2e-12 75.5 99 51.5
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 4.6e-07 59.3 68 48.5


User provided reference genes

Program Settings