Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.8e-270 935.3 461 100.0
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 7.3e-259 896.7 461 96.1
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 4.4e-248 860.9 461 90.9
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.6e-245 852.4 461 90.5
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 3.0e-236 821.6 461 87.2
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.0e-228 796.6 461 84.4
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.7e-228 795.8 460 84.6
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 3.9e-228 794.7 462 84.8
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.5e-227 792.7 475 82.3
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 6.2e-226 787.3 455 84.2
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 3.2e-222 775.0 481 79.6
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 1.0e-220 770.0 468 81.2
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 2.7e-213 745.3 456 78.9
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.5e-211 738.8 464 78.2
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.2e-208 729.9 461 75.9
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 2.0e-208 729.2 462 76.4
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 7.6e-208 727.2 460 76.7
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 2.9e-207 725.3 462 76.0
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 6.5e-207 724.2 460 77.0
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 9.3e-206 720.3 462 76.0
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 9.3e-206 720.3 461 74.8
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 1.2e-205 719.9 424 81.1
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.7e-205 718.8 464 76.3
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 3.5e-205 718.4 452 76.1
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.3e-204 715.7 462 75.8
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.9e-204 714.9 464 75.4
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 4.3e-203 711.4 460 75.7
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 4.3e-203 711.4 436 78.4
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 5.7e-203 711.1 458 75.3
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 9.7e-203 710.3 465 74.2
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.3e-202 709.9 454 75.1
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.6e-202 709.5 458 73.4
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 3.7e-202 708.4 463 73.4
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.1e-201 706.8 462 75.8
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 4.1e-201 704.9 458 74.5
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.2e-200 703.4 455 75.6
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.2e-200 703.4 455 75.6
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.2e-200 703.4 462 73.6
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 5.9e-200 701.0 456 71.7
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 7.7e-200 700.7 451 76.7
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 1.0e-199 700.3 459 73.4
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 5.0e-199 698.0 453 74.8
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 8.5e-199 697.2 459 72.3
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 1.9e-198 696.0 453 73.7
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 7.2e-198 694.1 447 74.5
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 7.2e-198 694.1 434 74.7
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 9.4e-198 693.7 454 73.1
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 9.4e-198 693.7 456 73.5
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.2e-197 693.3 447 74.3
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 1.2e-197 693.3 437 74.1
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 1.6e-197 693.0 497 69.8
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 2.1e-197 692.6 459 73.6
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 2.1e-197 692.6 454 71.4
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 2.1e-197 692.6 456 73.2
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 2.7e-197 692.2 447 74.0
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 2.7e-197 692.2 455 73.2
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 6.1e-197 691.0 463 73.4
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 7.9e-197 690.6 442 74.2
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 7.9e-197 690.6 456 73.7
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 1.0e-196 690.3 459 73.0
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 1.4e-196 689.9 459 73.2
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.8e-196 689.5 451 72.1
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 2.3e-196 689.1 459 73.0
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.0e-196 688.7 453 73.1
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 6.7e-196 687.6 448 73.9
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 6.7e-196 687.6 454 73.3
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 8.8e-196 687.2 458 72.3
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.1e-195 686.8 450 72.4
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 5.7e-195 684.5 454 72.9
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 7.4e-195 684.1 459 72.1
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 1.3e-194 683.3 458 71.2
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.2e-194 682.6 459 71.9
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 2.2e-194 682.6 494 68.8
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 2.8e-194 682.2 434 75.6
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 6.3e-194 681.0 482 69.5
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.4e-193 679.9 459 72.8
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 6.9e-193 677.6 597 59.0
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 9.1e-193 677.2 454 72.0
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.5e-192 676.4 460 73.5
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 3.4e-192 675.2 474 67.7
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 5.9e-192 674.5 452 72.8
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.7e-192 674.1 462 72.7
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.7e-189 665.6 499 66.3
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 4.7e-189 664.8 456 70.2
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.4e-188 663.3 509 65.4
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 2.3e-188 662.5 433 74.1
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 8.8e-188 660.6 452 71.2
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 7.4e-187 657.5 450 70.7
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.3e-186 656.8 426 74.4
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.7e-186 656.4 459 70.2
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 2.8e-186 655.6 456 68.6
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 3.7e-186 655.2 459 69.1
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.4e-185 652.5 467 69.2
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 3.1e-185 652.1 364 87.4
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 3.1e-185 652.1 424 72.9
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 7.7e-184 647.5 544 61.0
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 1.9e-182 642.9 456 70.2
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 8.3e-170 600.9 434 66.4
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 5.4e-169 598.2 370 77.0
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.9e-167 592.4 379 74.9
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.0e-164 582.0 362 77.6
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.6e-157 560.1 379 69.9
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 1.7e-151 540.0 434 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 1.9e-150 536.6 436 61.0
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 5.6e-150 535.0 394 67.5
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 3.6e-149 532.3 438 59.6
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 9.2e-145 517.7 452 59.5
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.2e-139 500.7 477 55.6
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 2.2e-138 496.5 451 54.8
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 3.9e-135 485.7 445 55.5
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 9.5e-134 481.1 375 65.1
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.9e-126 456.8 272 77.2
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 1.6e-125 453.8 437 54.0
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 6.0e-120 435.3 284 72.5
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 4.8e-117 425.6 278 71.6
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 2.9e-106 389.8 498 46.0
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.9e-105 387.1 256 73.0
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 1.2e-104 384.4 247 68.4
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 5.8e-99 365.5 430 46.0
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.9e-95 352.8 253 71.9
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.9e-94 350.5 538 40.9
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 4.8e-85 319.3 458 39.3
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.4e-79 301.2 253 63.6
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.8e-79 300.8 246 64.6
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 2.6e-70 270.4 239 58.6
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.2e-64 251.5 158 74.7
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.4e-63 248.1 195 66.7
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 5.7e-62 242.7 184 66.8
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.9e-59 232.6 184 62.5
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.9e-57 227.6 151 69.5
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.7e-56 223.8 122 87.7
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.5e-54 218.0 239 51.0
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 4.1e-52 209.9 139 74.1
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 5.6e-41 172.9 102 86.3
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 5.6e-41 172.9 114 74.6
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 7.3e-41 172.6 111 77.5
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.4e-36 156.4 106 72.6
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 1.6e-35 154.8 108 71.3
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 5.9e-35 152.9 98 75.5
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 1.9e-33 147.9 106 70.8
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 5.8e-30 136.3 90 74.4
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.2e-29 134.4 338 30.8
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.7e-27 127.5 98 60.2
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 1.5e-22 111.7 66 80.3
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 2.2e-21 107.8 68 77.9
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 4.9e-21 106.7 71 80.3
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 4.9e-21 106.7 71 80.3
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 4.9e-21 106.7 71 80.3
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.0e-18 99.0 102 53.9
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.7e-18 98.2 97 49.5
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 5.2e-15 86.7 69 66.7
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.2e-11 75.5 307 28.0
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 7.8e-11 72.8 41 82.9
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.5e-09 68.6 37 89.2
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 1.5e-09 68.6 37 89.2
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 4.3e-09 67.0 37 86.5
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 6.2e-08 63.2 90 42.2
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 8.1e-08 62.8 49 61.2
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.1e-07 62.4 51 56.9
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 2.4e-07 61.2 295 27.1
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 6.9e-07 59.7 296 27.4
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 9.0e-07 59.3 233 26.6
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 9.0e-07 59.3 233 26.6
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 9.0e-07 59.3 233 26.6
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.2e-06 58.9 233 27.5
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.2e-06 58.9 186 30.6
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.5e-06 58.5 220 28.2
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.5e-06 58.5 324 25.9
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.5e-06 58.5 297 25.9
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 2.0e-06 58.2 65 52.3
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 5.8e-06 56.6 240 27.5
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 7.6e-06 56.2 38 65.8
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 9.9e-06 55.8 231 27.7


User provided reference genes

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