Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G006966 Glycine max HOM05D002498 ORTHO05D002553 3.1e-46 188.3 113 100.0
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 1.1e-35 153.3 89 95.5
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 1.1e-30 136.7 97 81.4
Phvul.010G130700 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 1.4e-30 136.3 90 85.6
Lj3g0023911 Lotus japonicus HOM05D002498 ORTHO05D002553 2.9e-28 128.6 90 81.1
Lalb_Chr04g0263441 Lupinus albus HOM05D002498 ORTHO05D002553 1.1e-27 126.7 90 80.0
VMungo0331G0210 Vigna mungo HOM05D002498 ORTHO05D002553 3.3e-27 125.2 90 78.9
Ca_23371_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 5.7e-24 114.4 89 77.5
TPR.G32477 Trifolium pratense HOM05D002498 ORTHO05D002553 2.2e-23 112.5 90 75.6
arahy.Tifrunner.gnm1.ann1.U78AI9 Arachis hypogaea HOM05D002498 ORTHO05D002553 6.4e-23 110.9 91 75.8
arahy.Tifrunner.gnm1.ann1.T5SCHP Arachis hypogaea HOM05D002498 ORTHO05D002553 1.1e-22 110.2 90 74.4
CiPaw.01G219200 Carya illinoinensis HOM05D002498 ORTHO05D002553 2.4e-22 109.0 87 72.4
THA.LOC104813958 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 2.7e-21 105.5 96 69.8
ClCG09G000950 Citrullus lanatus HOM05D002498 ORTHO05D002553 5.9e-21 104.4 104 65.4
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 2.3e-20 102.4 88 64.8
Sed0015077 Sechium edule HOM05D002498 ORTHO05D002553 2.3e-20 102.4 92 66.3
MELO3C024357.2 Cucumis melo HOM05D002498 ORTHO05D002553 3.0e-20 102.1 91 70.3
CsaV3_7G034500 Cucumis sativus L. HOM05D002498 ORTHO05D002553 3.0e-20 102.1 91 70.3
Medtr8g020480 Medicago truncatula HOM05D002498 ORTHO05D002553 3.0e-20 102.1 90 67.8
Actinidia39082 Actinidia chinensis HOM05D002498 ORTHO05D002553 8.6e-20 100.5 89 67.4
THA.LOC104808053 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 8.6e-20 100.5 90 70.0
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 1.1e-19 100.1 90 65.6
FAN05G3736 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.9e-19 99.4 86 68.6
GSVIVG01016770001 Vitis vinifera HOM05D002498 ORTHO05D002553 1.9e-19 99.4 124 52.4
FvH4_6g34640 Fragaria vesca HOM05D002498 ORTHO05D002553 2.5e-19 99.0 86 68.6
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.5e-19 99.0 86 68.6
FAN09G3304 Fragaria x ananassa HOM05D002498 ORTHO05D002553 2.5e-19 99.0 86 68.6
FAN14G0943 Fragaria x ananassa HOM05D002498 ORTHO05D002553 2.5e-19 99.0 86 68.6
Carub.0001s1720 Capsella rubella HOM05D002498 ORTHO05D002553 3.3e-19 98.6 90 68.9
TAR636G1942 Trochodendron aralioides HOM05D002498 ORTHO05D002553 3.3e-19 98.6 93 66.7
MD09G1184100 Malus domestica HOM05D002498 ORTHO05D002553 4.3e-19 98.2 90 65.6
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 7.3e-19 97.4 103 60.2
AL1G29720 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 9.5e-19 97.1 90 67.8
AT1G17440 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 9.5e-19 97.1 90 67.8
QL05p007807 Quercus lobata HOM05D002498 ORTHO05D002553 4.7e-18 94.7 90 64.4
Sp1g15580 Schrenkiella parvula HOM05D002498 ORTHO05D002553 1.1e-17 93.6 90 65.6
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 1.4e-17 93.2 124 56.5
RcHm_v2.0_Chr2g0145171 Rosa chinensis HOM05D002498 ORTHO05D002553 6.8e-17 90.9 87 67.8
MSTRG.14437 Avicennia marina HOM05D002498 ORTHO05D002553 8.9e-17 90.5 87 63.2
CANSAT56G2749 Cannabis sativa HOM05D002498 ORTHO05D002553 8.9e-17 90.5 119 53.8
CARHR018030 Cardamine hirsuta HOM05D002498 ORTHO05D002553 2.0e-16 89.4 90 64.4
Actinidia26030 Actinidia chinensis HOM05D002498 ORTHO05D002553 2.6e-16 89.0 89 62.9
Aa31LG4G2990 Aethionema arabicum HOM05D002498 ORTHO05D002553 2.6e-16 89.0 90 62.2
Haze_16027 Corylus avellana HOM05D002498 ORTHO05D002553 2.6e-16 89.0 87 65.5
Thecc.06G119300 Theobroma cacao HOM05D002498 ORTHO05D002553 2.6e-16 89.0 90 65.6
Thhalv10006997m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 3.4e-16 88.6 90 65.6
Rhsim12G0209700 Rhododendron simsii HOM05D002498 ORTHO05D002553 3.4e-16 88.6 92 64.1
Duzib235G0745 Durio zibethinus HOM05D002498 ORTHO05D002553 7.5e-16 87.4 90 64.4
Gohir.A10G053200 Gossypium hirsutum HOM05D002498 ORTHO05D002553 7.5e-16 87.4 90 67.8
Gohir.D10G055000 Gossypium hirsutum HOM05D002498 ORTHO05D002553 7.5e-16 87.4 90 67.8
Gorai.011G058700 Gossypium raimondii HOM05D002498 ORTHO05D002553 7.5e-16 87.4 90 67.8
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 1.3e-15 86.7 90 62.2
HPP92_026973 Vanilla planifolia HOM05D002498 ORTHO05D002553 1.3e-15 86.7 98 56.1
Ciclev10025234m.g Citrus clementina HOM05D002498 ORTHO05D002553 1.7e-15 86.3 91 65.9
DCAR_016127 Daucus carota HOM05D002498 ORTHO05D002553 1.7e-15 86.3 90 56.7
Nitab4.5_0012529g0010 Nicotiana tabacum HOM05D002498 ORTHO05D002553 2.2e-15 85.9 93 61.3
Gohir.D06G201400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 3.7e-15 85.1 90 65.6
Gorai.010G235100 Gossypium raimondii HOM05D002498 ORTHO05D002553 3.7e-15 85.1 90 65.6
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 1.1e-14 83.6 90 57.8
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.9e-14 82.8 90 60.0
PGR119G0909 Punica granatum HOM05D002498 ORTHO05D002553 1.9e-14 82.8 96 59.4
CAN.G862.29 Capsicum annuum HOM05D002498 ORTHO05D002553 2.4e-14 82.4 93 60.2
CDE09G0028 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 2.4e-14 82.4 93 59.1
Peaxi162Scf00038g01936 Petunia axillaris HOM05D002498 ORTHO05D002553 2.4e-14 82.4 94 61.7
Gohir.A06G193600 Gossypium hirsutum HOM05D002498 ORTHO05D002553 3.2e-14 82.0 90 64.4
Oeu007562.1 Olea europaea HOM05D002498 ORTHO05D002553 3.2e-14 82.0 94 58.5
AUR62000647 Chenopodium quinoa HOM05D002498 ORTHO05D002553 4.1e-14 81.6 93 58.1
Manes.04G144200 Manihot esculenta HOM05D002498 ORTHO05D002553 4.1e-14 81.6 82 59.8
PGSC0003DMG400002568 Solanum tuberosum HOM05D002498 ORTHO05D002553 4.1e-14 81.6 91 62.6
CDE02G1135 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 5.4e-14 81.3 93 58.1
Solyc03g122020.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 5.4e-14 81.3 91 61.5
Sopen03g040820 Solanum pennellii HOM05D002498 ORTHO05D002553 5.4e-14 81.3 91 61.5
A06p13370 Brassica napus HOM05D002498 ORTHO05D002553 7.0e-14 80.9 90 58.9
C05p15830 Brassica napus HOM05D002498 ORTHO05D002553 7.0e-14 80.9 90 58.9
BolC5t30289H Brassica oleracea HOM05D002498 ORTHO05D002553 7.0e-14 80.9 90 58.9
BraA06t24489Z Brassica rapa HOM05D002498 ORTHO05D002553 7.0e-14 80.9 90 58.9
SGA_v2.0_scaffold71G23856 Striga asiatica HOM05D002498 ORTHO05D002553 9.2e-14 80.5 91 57.1
Aqoxy1G00838 Aquilegia oxysepala HOM05D002498 ORTHO05D002553 1.2e-13 80.1 104 58.7
Sc12g0010550 Simmondsia chinensis HOM05D002498 ORTHO05D002553 1.2e-13 80.1 90 57.8
Ah.06g188950 Amaranthus hybridus HOM05D002498 ORTHO05D002553 1.6e-13 79.7 86 57.0
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 1.6e-13 79.7 91 59.3
Manes.11G020700 Manihot esculenta HOM05D002498 ORTHO05D002553 4.6e-13 78.2 90 58.9
Lsat_1_v5_gn_1_38060 Lactuca sativa HOM05D002498 ORTHO05D002553 3.0e-12 75.5 87 55.2
Eucgr.F03174 Eucalyptus grandis HOM05D002498 ORTHO05D002553 8.6e-12 73.9 97 54.6
Hund07160 Selenicereus undatus HOM05D002498 ORTHO05D002553 1.9e-11 72.8 93 57.0
Atru.chr1.3950 Acer truncatum HOM05D002498 ORTHO05D002553 9.5e-11 70.5 117 49.6
HanXRQChr04g0094561 Helianthus annuus HOM05D002498 ORTHO05D002553 1.2e-10 70.1 87 52.9
SHI32207 Sapria himalayana HOM05D002498 ORTHO05D002553 1.2e-10 70.1 90 48.9
Migut.I01070 Erythranthe guttata HOM05D002498 ORTHO05D002553 1.6e-10 69.7 87 52.9
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 2.1e-10 69.3 111 45.9
EL10Ac4g09793 Beta vulgaris HOM05D002498 ORTHO05D002553 2.8e-10 68.9 93 58.1
Cc11_g03670 Coffea canephora HOM05D002498 ORTHO05D002553 1.8e-09 66.2 93 54.8
Duzib192G0999 Durio zibethinus HOM05D002498 ORTHO05D002553 1.8e-09 66.2 90 54.4
Psat4g182480 Pisum sativum HOM05D002498 ORTHO05D002553 3.1e-09 65.5 94 57.4
ECA247G3107 Erigeron canadensis HOM05D002498 ORTHO05D002553 1.5e-08 63.2 92 50.0
Lj5C37T8 Lonicera japonica HOM05D002498 ORTHO05D002553 1.7e-07 59.7 50 66.0
PSO339G1709 Papaver somniferum HOM05D002498 ORTHO05D002553 2.2e-07 59.3 89 47.2
C08p43860 Brassica napus HOM05D002498 ORTHO05D002553 3.7e-07 58.5 88 51.1
BolC8t51935H Brassica oleracea HOM05D002498 ORTHO05D002553 3.7e-07 58.5 88 51.1
Dinv30674 Davidia involucrata HOM05D002498 ORTHO05D002553 3.7e-07 58.5 106 48.1
Dinv34334 Davidia involucrata HOM05D002498 ORTHO05D002553 3.7e-07 58.5 106 48.1
unitig_32.g11187 Utricularia gibba HOM05D002498 ORTHO05D002553 1.4e-06 56.6 90 46.7
Zm00001eb148060 Zea mays HOM05D002498 ORTHO05D002553 1.9e-06 56.2 86 45.3
PSO384G1420 Papaver somniferum HOM05D002498 ORTHO05D002553 2.4e-06 55.8 89 48.3
A09p60370 Brassica napus HOM05D002498 ORTHO05D002553 4.1e-06 55.1 90 50.0
BraA09t41409Z Brassica rapa HOM05D002498 ORTHO05D002553 4.1e-06 55.1 90 50.0


User provided reference genes

Program Settings