Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 0.0e+00 1642.1 848 100.0
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 0.0e+00 1493.4 848 91.4
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 0.0e+00 1420.6 852 85.3
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 0.0e+00 1399.0 850 85.3
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 0.0e+00 1263.4 794 78.8
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 0.0e+00 1233.0 850 74.1
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 0.0e+00 1226.5 797 77.9
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 0.0e+00 1222.6 795 77.5
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 0.0e+00 1135.9 790 74.1
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 0.0e+00 1134.4 802 72.3
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 8.9e-279 963.8 801 61.9
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 1.5e-278 963.0 814 60.7
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 2.3e-274 949.1 804 60.7
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 8.6e-274 947.2 815 60.4
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 5.6e-273 944.5 803 61.8
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 4.7e-272 941.4 805 60.2
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.8e-271 939.5 825 58.8
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 2.4e-271 939.1 800 60.8
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 5.2e-271 937.9 800 61.5
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 3.4e-270 935.3 798 61.4
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 2.1e-267 926.0 788 59.4
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 2.7e-267 925.6 796 59.3
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.6e-267 924.9 811 59.9
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 6.0e-267 924.5 803 59.8
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 1.3e-266 923.3 805 60.2
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 3.3e-265 918.7 795 59.9
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 3.6e-264 915.2 836 57.9
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 7.6e-262 907.5 801 60.4
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 6.4e-261 904.4 767 60.0
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 8.4e-261 904.0 812 59.1
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.6e-259 899.8 798 59.6
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.3e-258 896.7 786 59.4
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 5.1e-258 894.8 805 56.8
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 8.7e-258 894.0 818 58.2
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.3e-257 892.1 798 59.1
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 6.2e-256 887.9 798 59.4
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 9.0e-255 884.0 794 57.7
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 5.8e-254 881.3 838 56.2
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 7.6e-254 880.9 798 57.3
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 1.9e-252 876.3 803 56.9
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 1.2e-251 873.6 820 56.5
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.3e-250 870.2 815 57.1
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.8e-250 869.8 798 58.5
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 5.1e-250 868.2 801 57.4
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 6.7e-250 867.8 806 55.3
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.6e-248 863.2 800 57.8
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 6.2e-248 861.3 817 56.1
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 8.1e-248 860.9 805 56.8
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.5e-246 856.7 805 55.9
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 2.0e-246 856.3 795 57.0
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 3.4e-246 855.5 810 56.5
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.1e-243 846.3 813 56.2
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 3.5e-243 845.5 806 56.8
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 2.5e-241 839.3 810 55.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 5.3e-239 831.6 806 54.2
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 6.9e-239 831.2 810 54.6
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 9.0e-239 830.9 813 54.6
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.5e-238 830.1 797 54.1
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 5.0e-237 825.1 813 54.7
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 5.5e-236 821.6 807 54.3
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 6.3e-232 808.1 658 61.2
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 4.1e-231 805.4 812 52.2
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 4.1e-231 805.4 816 54.4
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 7.7e-230 801.2 796 53.9
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 2.9e-229 799.3 811 52.5
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 3.8e-229 798.9 812 52.0
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.4e-228 797.0 781 53.4
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.6e-227 792.3 846 51.7
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.3e-225 785.8 802 53.5
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 2.2e-224 783.1 805 50.9
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 6.3e-224 781.6 805 50.8
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 6.3e-224 781.6 794 51.0
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 9.1e-223 777.7 809 51.4
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 2.0e-222 776.5 814 52.5
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.0e-221 774.2 810 51.2
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 2.2e-221 773.1 797 50.7
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 2.2e-221 773.1 797 50.7
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 6.5e-221 771.5 793 51.1
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 6.5e-221 771.5 805 50.6
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 2.5e-220 769.6 795 50.9
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 4.2e-220 768.8 808 50.7
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 3.6e-219 765.8 802 50.4
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 4.7e-219 765.4 796 50.5
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.4e-218 763.8 811 49.8
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 6.7e-218 761.5 801 49.8
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.1e-215 752.3 542 72.5
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 1.0e-213 747.7 806 50.2
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.1e-211 738.4 810 48.8
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 5.3e-207 725.3 801 51.7
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 2.0e-206 723.4 807 50.2
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 2.7e-203 713.0 713 52.9
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 4.0e-202 709.1 801 50.4
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.7e-197 693.7 808 46.3
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 4.7e-195 685.6 815 45.9
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.0e-193 680.2 485 68.2
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 6.3e-192 675.2 557 59.8
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 2.4e-191 673.3 810 46.7
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 4.5e-190 669.1 718 48.6
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 9.5e-180 634.8 613 57.9
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 1.0e-173 614.8 674 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 2.3e-170 603.6 835 41.2
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 4.6e-166 589.3 830 41.7
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.5e-161 574.3 730 43.7
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 6.0e-158 562.4 812 40.6
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 7.3e-156 555.4 589 50.6
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 6.0e-142 509.2 395 60.8
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 1.0e-141 508.4 773 38.7
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.9e-128 463.8 390 57.9
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.0e-117 428.7 455 49.9
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.3e-117 427.6 480 49.4
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 1.7e-104 384.8 423 48.2
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.4e-98 365.2 425 51.1
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 3.2e-95 354.0 408 49.8
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 2.0e-92 344.7 415 49.6
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 7.2e-87 326.2 478 43.9
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 5.9e-81 306.6 790 29.6
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 7.8e-73 279.6 199 69.8
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 7.0e-66 256.5 231 52.8
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 1.2e-52 212.6 363 40.8
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.7e-49 201.4 188 57.4
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 5.2e-37 160.6 488 28.3
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 2.6e-28 131.7 181 46.4
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 7.1e-26 123.6 197 37.6
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.6e-25 122.5 80 68.8
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.8e-24 119.0 92 57.6
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 3.9e-24 117.9 157 48.4
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 2.1e-22 112.1 210 33.3
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 1.4e-21 109.4 99 53.5
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 6.2e-14 84.0 49 79.6
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 6.2e-14 84.0 49 79.6
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.6e-12 78.6 128 35.9
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 7.6e-12 77.0 175 36.0
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 2.2e-11 75.5 114 43.0
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 2.2e-11 75.5 114 43.0
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 4.9e-11 74.3 375 26.9
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 8.4e-11 73.6 67 50.7
VMungo0331G1807 Vigna mungo HOM05D005319 ORTHO05D006632 2.1e-09 68.9 59 64.4
C01p19550 Brassica napus HOM05D005319 ORTHO05D006632 8.7e-08 63.5 125 38.4
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.5e-07 62.8 42 71.4
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.5e-07 62.8 42 71.4
Hma1.2p1_0586F.1_g183745 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 1.5e-07 62.8 46 63.0
Hma1.2p1_0643F.1_g194445 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 1.5e-07 62.8 46 63.0
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 5.7e-07 60.8 41 70.7
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 2.2e-06 58.9 45 62.2
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 2.2e-06 58.9 45 62.2
CBR_g472 Chara braunii HOM05D003126 ORTHO05D001316 2.8e-06 58.5 89 34.8
BcaC06g32892 Brassica carinata HOM05D008164 ORTHO05D010222 3.7e-06 58.2 38 71.1
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 4.8e-06 57.8 101 34.7
SEGI_13206 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 6.3e-06 57.4 71 45.1
Zm00001eb001700 Zea mays HOM05D006053 ORTHO05D008381 8.2e-06 57.0 85 38.8


User provided reference genes

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