Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1806.6 887 100.0
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1641.7 887 92.9
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 0.0e+00 1455.7 887 82.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 0.0e+00 1338.2 888 76.6
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1309.7 888 74.9
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1307.7 888 74.8
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 0.0e+00 1242.6 890 71.7
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1241.5 889 72.1
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1241.5 889 72.1
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1232.2 890 72.5
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1158.3 832 71.2
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 0.0e+00 1152.1 889 67.9
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.2e-294 1016.5 939 59.3
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 6.9e-290 1000.7 947 59.0
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.2e-254 883.6 900 54.1
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 8.0e-254 880.9 888 53.6
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 2.0e-252 876.3 891 54.4
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 9.7e-252 874.0 889 53.5
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.0e-248 861.7 891 54.0
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 5.5e-247 858.2 901 53.5
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 4.5e-241 838.6 898 52.8
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.0e-240 837.4 895 52.0
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 6.5e-240 834.7 892 51.9
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 5.5e-239 831.6 896 51.8
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 9.4e-239 830.9 896 52.0
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.0e-236 823.2 893 51.7
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.7e-235 820.1 920 50.5
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.8e-235 819.3 897 50.5
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 3.7e-235 818.9 895 51.7
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 8.3e-235 817.8 896 51.0
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.1e-234 817.4 896 50.8
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 5.4e-234 815.1 897 51.2
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 3.5e-233 812.4 898 51.0
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.3e-232 809.7 912 50.3
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.8e-232 808.9 896 51.2
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.6e-230 803.5 871 51.1
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.1e-230 803.1 898 50.6
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.7e-224 783.5 907 49.8
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.9e-223 780.0 909 48.0
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-223 779.6 895 50.6
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 4.3e-223 778.9 895 50.4
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.1e-222 776.5 895 50.5
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.1e-218 764.2 911 48.5
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.4e-218 763.1 898 49.8
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 7.1e-210 734.9 875 47.1
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 4.0e-205 719.2 914 46.3
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 5.8e-204 715.3 914 46.5
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.2e-203 713.4 899 48.3
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.1e-202 711.1 914 46.2
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.9e-202 710.3 880 48.1
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.1e-201 706.8 923 44.7
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.1e-198 696.8 869 46.6
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.8e-198 696.4 900 46.3
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 4.7e-198 695.7 895 46.1
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.2e-198 695.3 875 47.9
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.4e-197 693.3 876 46.6
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 4.4e-196 689.1 873 46.0
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 4.4e-196 689.1 924 45.5
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 4.4e-196 689.1 895 46.0
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.3e-195 687.6 888 44.9
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.3e-195 687.6 889 45.2
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.7e-195 687.2 870 46.4
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.7e-195 687.2 908 44.8
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 4.9e-195 685.6 877 45.3
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.1e-194 684.5 893 45.7
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.9e-194 683.7 908 44.6
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 3.2e-194 682.9 880 45.8
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 2.1e-193 680.2 869 45.0
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.3e-192 676.8 763 51.0
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.0e-192 676.4 876 44.6
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 3.0e-192 676.4 898 44.9
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 3.9e-192 676.0 897 44.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 6.6e-192 675.2 878 46.2
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 6.6e-192 675.2 878 46.2
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.5e-191 673.3 892 45.5
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.3e-190 671.0 904 43.8
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.6e-190 669.5 872 45.5
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 6.9e-189 665.2 901 44.3
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.5e-188 664.1 893 43.7
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.9e-186 657.1 896 45.9
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 9.3e-186 654.8 866 44.7
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.1e-185 653.7 894 43.8
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 6.6e-184 648.7 880 43.2
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-183 647.9 756 49.9
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.9e-183 647.1 897 44.5
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 3.3e-183 646.4 896 42.3
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 5.6e-183 645.6 813 45.1
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 6.2e-182 642.1 869 44.6
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 6.9e-181 638.6 780 48.6
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.6e-180 636.7 875 43.7
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 5.8e-180 635.6 874 43.7
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 5.8e-180 635.6 874 43.7
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 9.9e-180 634.8 867 44.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.9e-177 625.2 986 40.6
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 4.8e-174 615.9 693 50.6
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.4e-173 614.4 655 52.7
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 9.0e-173 611.7 934 41.0
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 2.2e-171 607.1 897 42.1
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.9e-170 604.0 835 44.4
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.7e-169 600.1 603 53.9
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.3e-166 591.3 894 43.0
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.6e-166 590.9 569 57.3
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 2.0e-164 583.9 875 43.0
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.5e-154 550.4 793 42.5
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.6e-153 547.7 887 40.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.1e-153 547.4 752 44.4
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 2.3e-152 543.9 901 38.3
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 7.2e-146 522.3 722 42.8
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.2e-145 521.5 608 47.0
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.7e-142 511.1 592 49.3
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.2e-138 496.5 685 44.1
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.2e-137 495.0 710 41.8
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 8.5e-131 472.2 905 37.3
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 1.0e-128 465.3 657 43.1
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 5.7e-127 459.5 582 45.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 1.2e-116 425.2 532 49.4
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 8.6e-115 419.1 348 64.9
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.2e-108 398.7 546 45.6
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.7e-94 351.7 569 38.1
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.9e-94 350.9 366 49.7
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 3.7e-94 350.5 252 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 4.4e-87 327.0 993 29.7
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 5.8e-87 326.6 674 34.3
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 6.4e-86 323.2 390 48.5
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 6.0e-84 316.6 512 40.6
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.5e-79 302.0 194 75.3
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.0e-79 301.6 666 33.3
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 5.8e-79 300.1 314 53.2
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-78 298.9 165 91.5
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 1.5e-71 275.4 153 90.8
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 2.0e-71 275.0 153 90.2
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 3.4e-71 274.2 626 30.8
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 2.2e-70 271.6 165 84.2
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 3.8e-70 270.8 500 35.4
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.2e-68 265.8 665 29.8
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.5e-68 264.2 223 63.2
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.3e-67 262.3 487 38.6
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 5.1e-67 260.4 170 81.2
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 4.8e-65 253.8 153 83.7
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 9.9e-63 246.1 194 66.5
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 4.0e-56 224.2 189 64.0
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.1e-51 207.2 177 60.5
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 2.8e-49 201.4 119 89.9
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 4.8e-49 200.7 309 41.7
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.1e-48 199.5 172 60.5
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.4e-48 199.1 223 49.3
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.9e-45 188.7 162 59.3
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 6.1e-44 183.7 467 32.8
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 3.0e-43 181.4 123 76.4
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 8.7e-43 179.9 123 76.4
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 9.0e-40 169.9 182 53.8
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.0e-38 166.4 199 48.7
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 2.2e-38 165.2 154 59.7
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 4.2e-37 161.0 148 58.8
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 5.1e-35 154.1 103 67.0
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 4.1e-32 144.4 122 61.5
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.2e-28 132.9 225 36.0
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.8e-27 129.0 114 53.5
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.5e-26 125.9 262 32.1
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.2e-25 122.1 97 61.9
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.7e-25 121.3 96 62.5
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.6e-23 115.9 686 21.9
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.3e-22 112.8 94 61.7
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.7e-20 104.4 90 58.9
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 6.1e-20 104.0 68 72.1
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 1.8e-19 102.4 251 26.7
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.7e-17 95.9 326 23.6
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.0e-14 86.7 203 34.0
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 1.1e-13 83.2 75 60.0
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 3.0e-11 75.1 58 69.0
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 6.8e-11 73.9 241 29.0
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.5e-10 72.8 61 60.7
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.8e-09 68.6 79 46.8
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 3.7e-09 68.2 143 31.5
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 7.0e-08 63.9 49 59.2
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.2e-07 63.2 53 62.3
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.2e-07 63.2 157 29.3
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.0e-07 62.4 90 47.8
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.7e-07 62.0 56 57.1


User provided reference genes

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