Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G149502 Glycine max HOM05D000001 ORTHO05D009862 8.0e-85 317.0 155 100.0
Glyma.09G043600 Glycine max HOM05D000001 ORTHO05D009862 2.0e-51 206.1 125 81.6
Phvul.009G249300 Phaseolus vulgaris HOM05D000001 ORTHO05D009862 2.2e-42 176.0 128 71.1
arahy.Tifrunner.gnm1.ann1.YMF2MP Arachis hypogaea HOM05D000001 ORTHO05D009862 2.6e-27 125.9 106 64.2
arahy.Tifrunner.gnm1.ann1.TU0MUT Arachis hypogaea HOM05D000001 ORTHO05D009862 1.0e-26 124.0 106 63.2
Lj6g0002092 Lotus japonicus HOM05D000001 ORTHO05D009862 3.8e-26 122.1 84 67.9
TPR.G22350 Trifolium pratense HOM05D000001 ORTHO05D009862 7.1e-25 117.9 87 58.6
Psat1g155120 Pisum sativum HOM05D000001 ORTHO05D009862 1.2e-24 117.1 84 63.1
Medtr2g436470 Medicago truncatula HOM05D000001 ORTHO05D009862 7.9e-24 114.4 83 59.0
VMungo1309G0570 Vigna mungo HOM05D000001 ORTHO05D009862 8.7e-23 110.9 71 73.2
Lalb_Chr15g0083421 Lupinus albus HOM05D000001 ORTHO05D009862 1.3e-21 107.1 112 50.9
Haze_07092 Corylus avellana HOM05D000001 ORTHO05D009862 2.1e-16 89.7 119 41.2
QL10p000389 Quercus lobata HOM05D000001 ORTHO05D009862 1.5e-14 83.6 98 45.9
RcHm_v2.0_Chr7g0188581 Rosa chinensis HOM05D000001 ORTHO05D009862 7.4e-14 81.3 86 43.0
TWI14G1162 Tripterygium wilfordii HOM05D000001 ORTHO05D009862 2.8e-13 79.3 90 40.0
FAN04G0812 Fragaria x ananassa HOM05D000001 ORTHO05D009862 1.8e-12 76.6 86 40.7
FAN08G0922 Fragaria x ananassa HOM05D000001 ORTHO05D009862 3.1e-12 75.9 86 40.7
FAN13G0719 Fragaria x ananassa HOM05D000001 ORTHO05D009862 5.3e-12 75.1 107 34.6
FvH4_5g09670 Fragaria vesca HOM05D000001 ORTHO05D009862 1.2e-11 73.9 86 39.5
FAN18G1858 Fragaria x ananassa HOM05D000001 ORTHO05D009862 1.2e-11 73.9 86 39.5
Manes.14G044100 Manihot esculenta HOM05D000001 ORTHO05D009862 3.4e-11 72.4 109 36.7
GSVIVG01008656001 Vitis vinifera HOM05D000001 ORTHO05D009862 4.5e-11 72.0 116 37.1
PGR044G2670 Punica granatum HOM05D000001 ORTHO05D009862 7.7e-11 71.2 98 39.8
Gohir.D12G196300 Gossypium hirsutum HOM05D000001 ORTHO05D009862 1.0e-10 70.9 92 43.5
Gorai.008G210900 Gossypium raimondii HOM05D000001 ORTHO05D009862 1.0e-10 70.9 92 43.5
Eucgr.C03558 Eucalyptus grandis HOM05D000001 ORTHO05D009862 1.3e-10 70.5 99 39.4
Dinv13714 Davidia involucrata HOM05D000001 ORTHO05D009862 1.7e-10 70.1 91 39.6
Actinidia18293 Actinidia chinensis HOM05D000001 ORTHO05D009862 2.2e-10 69.7 95 36.8
CSS0039242 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009862 2.9e-10 69.3 103 36.9
Gohir.A12G193900 Gossypium hirsutum HOM05D000001 ORTHO05D009862 2.9e-10 69.3 121 37.2
Migut.I00668 Erythranthe guttata HOM05D000001 ORTHO05D009862 3.8e-10 68.9 90 35.6
SGA_v2.0_scaffold5G02803 Striga asiatica HOM05D002810 ORTHO05D003983 3.8e-10 68.9 113 31.9
Ciclev10033814m.g Citrus clementina HOM05D000001 ORTHO05D009862 6.5e-10 68.2 83 37.3
Duzib068G0945 Durio zibethinus HOM05D000001 ORTHO05D009862 6.5e-10 68.2 101 40.6
Thecc.03G141300 Theobroma cacao HOM05D000001 ORTHO05D009862 6.5e-10 68.2 103 41.7
TAR629G3356 Trochodendron aralioides HOM05D000001 ORTHO05D009862 6.5e-10 68.2 87 46.0
Atru.chr6.1929 Acer truncatum HOM05D000001 ORTHO05D009862 1.4e-09 67.0 91 38.5
vmacro19191 Vaccinium macrocarpon HOM05D000001 ORTHO05D009862 3.2e-09 65.9 98 34.7
MELO3C029622.2 Cucumis melo HOM05D000001 ORTHO05D009862 4.2e-09 65.5 88 42.0
Thhalv10013203m.g Eutrema salsugineum HOM05D000001 ORTHO05D009862 2.1e-08 63.2 101 36.6
THA.LOC104811557 Tarenaya hassleriana HOM05D000001 ORTHO05D009862 2.1e-08 63.2 101 33.7
DCAR_025643 Daucus carota HOM05D000001 ORTHO05D009862 2.7e-08 62.8 91 36.3
ClCG06G018390 Citrullus lanatus HOM05D000001 ORTHO05D009862 3.6e-08 62.4 87 42.5
A02p12530 Brassica napus HOM05D000001 ORTHO05D009862 4.6e-08 62.0 92 37.0
CsaV3_1G045140 Cucumis sativus L. HOM05D000001 ORTHO05D009862 6.1e-08 61.6 83 41.0
Cc04_g05810 Coffea canephora HOM05D000001 ORTHO05D009862 7.9e-08 61.2 86 37.2
Sopen06g026080 Solanum pennellii HOM05D000001 ORTHO05D009862 1.8e-07 60.1 141 28.4
Solyc06g068810.4 Solanum lycopersicum HOM05D000001 ORTHO05D009862 2.3e-07 59.7 141 28.4
BcaC03g14630 Brassica carinata HOM05D000001 ORTHO05D009862 3.0e-07 59.3 66 42.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.0e-07 59.3 66 42.4
BraA02t06315Z Brassica rapa HOM05D000001 ORTHO05D009862 3.0e-07 59.3 87 36.8
AT5G50990 Arabidopsis thaliana HOM05D000001 ORTHO05D009862 3.9e-07 58.9 86 34.9
Aa31LG3G7460 Aethionema arabicum HOM05D000001 ORTHO05D009862 5.1e-07 58.5 78 35.9
CAN.G1089.20 Capsicum annuum HOM05D000001 ORTHO05D009862 5.1e-07 58.5 133 31.6
Carub.0008s1100 Capsella rubella HOM05D000001 ORTHO05D009862 6.7e-07 58.2 86 34.9
CARHR257210 Cardamine hirsuta HOM05D000001 ORTHO05D009862 6.7e-07 58.2 86 33.7
Rhsim08G0198300 Rhododendron simsii HOM05D000001 ORTHO05D009862 8.8e-07 57.8 91 29.7
Sp6g13150 Schrenkiella parvula HOM05D000001 ORTHO05D009862 1.1e-06 57.4 86 34.9
Nn5g30952 Nelumbo nucifera HOM05D000001 ORTHO05D009862 2.0e-06 56.6 87 36.8
AUR62032214 Chenopodium quinoa HOM05D000001 ORTHO05D009862 2.5e-06 56.2 105 31.4
Potri.012G109300 Populus trichocarpa HOM05D000001 ORTHO05D009862 2.5e-06 56.2 78 35.9
Sc22g0003290 Simmondsia chinensis HOM05D000001 ORTHO05D009862 2.5e-06 56.2 98 28.6
Nitab4.5_0008858g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009862 4.3e-06 55.5 83 34.9
Nitab4.5_0001841g0050 Nicotiana tabacum HOM05D000001 ORTHO05D009862 5.7e-06 55.1 85 32.9
PSO170G3158 Papaver somniferum HOM05D000001 ORTHO05D009862 5.7e-06 55.1 92 39.1


User provided reference genes

Program Settings