Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 3.5e-173 611.7 341 100.0
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 4.3e-155 551.6 339 89.4
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 8.0e-146 520.8 346 82.7
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 4.7e-138 495.0 325 82.2
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 7.1e-118 427.9 342 73.4
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 2.8e-114 416.0 336 70.2
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.4e-113 413.7 320 71.2
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.2e-112 410.6 311 72.3
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.3e-108 397.1 321 69.8
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 8.7e-108 394.4 308 69.8
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 4.3e-107 392.1 316 68.4
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 4.3e-107 392.1 326 67.8
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 7.4e-107 391.3 321 66.0
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 2.1e-106 389.8 307 67.1
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 4.8e-106 388.7 325 63.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 8.1e-106 387.9 308 71.8
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 6.9e-105 384.8 327 66.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 9.0e-105 384.4 334 68.3
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.6e-104 382.9 321 66.0
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.4e-104 382.5 334 68.0
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 5.8e-104 381.7 334 66.8
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 9.9e-104 380.9 293 67.9
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.3e-103 380.6 319 68.7
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.3e-103 380.6 325 62.5
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.3e-103 380.6 292 68.2
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.2e-103 379.8 326 66.3
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 2.9e-103 379.4 293 72.0
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 4.9e-103 378.6 322 65.5
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.4e-102 376.3 301 64.1
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 7.1e-102 374.8 320 62.8
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 9.3e-102 374.4 292 69.5
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 9.3e-102 374.4 325 62.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.1e-101 373.2 330 62.1
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 2.7e-101 372.9 327 67.6
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.5e-101 372.5 325 65.5
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 6.0e-101 371.7 320 65.9
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.8e-100 370.2 310 62.3
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.3e-100 369.8 318 66.0
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.0e-100 369.4 304 65.5
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 3.0e-100 369.4 339 62.2
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 6.7e-100 368.2 321 67.0
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.5e-99 367.1 271 69.7
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.9e-99 366.7 350 62.0
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 9.6e-99 364.4 306 67.3
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.6e-98 363.6 306 69.3
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 2.4e-97 359.8 311 61.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 6.9e-97 358.2 302 67.9
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 6.9e-97 358.2 304 64.8
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.0e-96 356.7 291 66.0
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.0e-96 356.7 287 69.0
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.4e-94 350.5 350 60.0
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 3.2e-94 349.4 305 65.9
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.6e-93 347.1 317 64.7
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.0e-92 344.4 341 62.5
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.5e-91 340.5 254 68.9
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.9e-91 340.1 237 71.7
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.3e-91 339.3 229 72.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 5.7e-91 338.6 290 64.8
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 5.7e-91 338.6 259 66.4
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 5.7e-91 338.6 317 60.3
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.4e-91 338.2 277 63.5
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 7.4e-91 338.2 301 65.1
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 2.1e-90 336.7 229 73.4
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.1e-90 336.7 247 69.2
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 8.2e-90 334.7 285 66.0
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.8e-89 333.6 315 64.1
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 5.3e-89 332.0 320 59.1
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.5e-88 330.5 370 53.5
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.6e-88 329.7 318 60.7
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 5.9e-88 328.6 301 64.1
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.0e-87 327.8 250 68.0
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.7e-87 327.0 307 64.5
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.9e-87 326.2 264 70.1
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.1e-86 324.3 295 63.1
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 4.2e-86 322.4 343 57.4
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 5.5e-86 322.0 301 59.5
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 9.3e-86 321.2 306 62.7
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.6e-85 320.5 318 59.4
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 2.7e-85 319.7 306 62.4
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 3.6e-85 319.3 256 69.9
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.3e-84 316.6 289 63.0
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.3e-84 316.6 235 74.0
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 3.9e-84 315.8 301 63.1
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 5.1e-84 315.5 301 63.1
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 8.7e-84 314.7 301 62.8
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 2.5e-83 313.2 323 54.8
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.3e-82 310.8 347 58.2
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.3e-82 310.8 309 59.9
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 4.1e-81 305.8 330 57.9
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 4.1e-81 305.8 330 57.9
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 4.1e-81 305.8 350 56.0
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 9.0e-81 304.7 266 61.3
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.5e-80 302.4 318 58.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 7.7e-80 301.6 294 60.5
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.3e-79 300.8 323 56.3
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 3.8e-79 299.3 295 59.7
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 3.8e-79 299.3 315 56.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 5.0e-79 298.9 328 57.3
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.4e-78 297.4 328 56.4
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.4e-78 297.4 328 56.4
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 5.5e-78 295.4 291 56.7
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 7.2e-78 295.0 248 61.7
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.4e-76 290.8 335 56.7
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 9.7e-75 284.6 307 60.3
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.7e-74 283.9 317 56.8
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 2.2e-71 273.5 330 54.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 4.2e-70 269.2 233 58.4
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.3e-68 263.5 191 66.5
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 8.8e-68 261.5 295 52.2
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 5.3e-65 252.3 307 55.4
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 4.5e-64 249.2 288 49.0
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.1e-57 226.5 292 48.6
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.0e-55 221.5 270 45.9
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 5.0e-55 219.2 134 78.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 8.0e-53 211.8 234 47.4
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.5e-51 207.6 353 46.7
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.0e-51 207.2 268 50.4
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.6e-45 187.6 124 69.4
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 6.1e-45 185.7 142 66.9
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.3e-39 167.9 182 52.7
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.1e-37 160.6 312 36.9
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 4.0e-36 156.4 266 38.0
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 2.0e-35 154.1 95 75.8
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 2.0e-35 154.1 97 74.2
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 3.4e-35 153.3 177 43.5
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-26 124.8 253 32.8
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 3.2e-25 120.2 163 55.2
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.0e-23 115.2 70 77.1
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.3e-23 114.8 196 34.2
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.0e-19 100.9 145 43.4
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.2e-16 91.7 140 42.1
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.3e-14 83.6 182 32.4
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.4e-11 73.6 72 55.6
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.9e-09 67.8 192 27.1
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.7e-07 61.2 75 45.3
PRCOL_00005492 Prasinoderma coloniale HOM05D005493 ORTHO05D333432 3.0e-07 60.5 200 24.0
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 2.5e-06 57.4 104 28.8


User provided reference genes

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