Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 6.6e-287 989.9 479 100.0
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.4e-265 919.1 479 92.5
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 2.4e-252 875.2 479 87.1
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 1.4e-249 865.9 477 86.8
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 2.4e-236 822.0 481 83.4
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 6.9e-236 820.5 479 82.5
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 2.0e-235 818.9 479 82.5
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 4.9e-234 814.3 475 82.5
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 3.5e-232 808.1 476 81.7
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 7.4e-230 800.4 481 80.9
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 4.8e-229 797.7 473 81.2
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 6.7e-223 777.3 482 78.6
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 2.5e-222 775.4 481 78.4
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.2e-216 756.5 474 77.8
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 6.1e-216 754.2 477 77.4
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 1.5e-214 749.6 466 78.1
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 8.8e-207 723.8 471 74.7
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.8e-204 716.1 481 70.7
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 3.1e-204 715.3 478 71.8
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 7.0e-204 714.1 481 71.1
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 1.5e-203 713.0 470 71.5
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.9e-201 706.1 478 71.5
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 4.2e-201 704.9 440 74.5
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 2.7e-200 702.2 473 72.1
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 8.0e-200 700.7 468 70.9
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.4e-199 699.9 468 72.0
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 3.0e-199 698.7 468 71.8
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.1e-198 696.8 469 71.4
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 3.3e-198 695.3 470 70.9
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 9.7e-198 693.7 411 76.6
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 2.8e-197 692.2 479 71.0
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 2.8e-197 692.2 399 79.4
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 6.3e-197 691.0 475 68.8
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.4e-196 689.9 477 69.8
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 5.9e-195 684.5 482 69.3
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.3e-194 683.3 398 77.6
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 2.2e-194 682.6 470 69.1
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 5.0e-194 681.4 401 77.8
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 6.5e-194 681.0 398 77.4
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 6.5e-194 681.0 474 69.6
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 1.9e-193 679.5 480 68.5
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 3.6e-192 675.2 473 68.1
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 4.7e-192 674.9 475 67.6
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 8.0e-192 674.1 477 68.3
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 5.2e-191 671.4 401 77.8
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.8e-191 671.0 477 68.1
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 4.4e-190 668.3 482 66.8
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 9.8e-190 667.2 471 66.7
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 9.8e-190 667.2 449 70.2
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.2e-189 666.0 497 65.6
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 2.8e-189 665.6 449 70.2
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 4.8e-189 664.8 449 69.9
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.8e-188 662.9 482 67.8
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.6e-187 659.8 473 66.0
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 2.0e-187 659.4 399 76.2
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 5.9e-187 657.9 481 65.5
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 7.7e-187 657.5 403 75.7
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 7.7e-187 657.5 449 69.7
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.9e-186 655.6 405 74.3
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.2e-185 652.1 478 66.7
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 1.2e-184 650.2 426 71.4
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 1.4e-183 646.7 481 66.7
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 2.6e-182 642.5 466 65.9
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 7.5e-182 641.0 439 70.2
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 3.7e-181 638.6 448 68.8
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 3.1e-180 635.6 474 66.7
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 4.1e-180 635.2 476 66.8
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 9.1e-180 634.0 471 66.5
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 2.7e-179 632.5 407 73.5
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 2.7e-179 632.5 476 66.6
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 3.5e-179 632.1 478 66.1
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 4.5e-179 631.7 393 75.1
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 5.9e-179 631.3 476 66.4
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 5.9e-179 631.3 476 66.4
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.7e-178 629.8 417 69.8
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 1.7e-178 629.8 446 65.9
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.9e-177 626.3 475 65.9
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 4.2e-177 625.2 406 71.4
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 8.0e-176 620.9 407 71.0
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 8.0e-176 620.9 404 69.6
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 3.7e-173 612.1 403 70.5
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 3.7e-173 612.1 407 71.0
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 8.3e-173 610.9 466 61.4
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 8.3e-173 610.9 400 69.5
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.4e-172 609.4 460 62.4
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.0e-171 606.3 404 68.8
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 5.0e-170 601.7 409 69.9
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 5.0e-170 601.7 421 68.9
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.9e-169 599.7 400 67.8
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 7.3e-169 597.8 384 69.5
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 3.1e-167 592.4 357 76.5
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.5e-166 590.1 383 70.0
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.2e-165 586.3 355 76.9
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 4.9e-165 585.1 404 67.6
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 1.1e-164 583.9 459 63.4
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.1e-161 573.9 408 63.2
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 7.3e-161 571.2 420 63.1
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 4.7e-160 568.5 369 74.3
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 3.7e-157 558.9 400 64.5
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 2.7e-155 552.7 356 70.8
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 6.0e-155 551.6 412 65.5
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.1e-151 539.3 382 68.6
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 6.8e-151 538.1 353 67.1
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.1e-148 530.8 394 63.5
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 8.1e-144 514.6 382 66.5
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.4e-127 460.7 439 54.4
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 9.9e-126 454.5 432 49.3
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 8.4e-125 451.4 465 48.8
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 6.7e-122 441.8 404 51.7
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 4.8e-120 435.6 406 52.5
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 8.1e-120 434.9 258 79.5
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.4e-119 434.1 320 68.1
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 6.7e-114 415.2 435 47.8
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 2.7e-99 366.7 226 76.5
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.6e-86 324.3 243 60.5
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 3.4e-73 280.0 185 61.6
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 3.1e-71 273.5 209 64.1
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 4.2e-68 263.1 160 72.5
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 2.2e-64 250.8 238 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 3.7e-64 250.0 206 57.3
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.0e-58 231.9 160 65.0
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 1.0e-53 215.3 129 72.1
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 2.4e-47 194.1 129 65.9
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.3e-29 134.4 384 28.9
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 3.3e-28 130.6 86 72.1
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 8.1e-27 125.9 373 28.2
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 8.7e-21 105.9 440 26.8
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 6.2e-19 99.8 346 26.6
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 5.1e-13 80.1 54 74.1
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 9.6e-12 75.9 80 56.2
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 5.3e-10 70.1 55 56.4
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 9.9e-09 65.9 91 40.7
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 4.9e-08 63.5 61 50.8
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 4.9e-08 63.5 61 50.8
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.4e-07 62.0 166 30.1


User provided reference genes

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