Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 4.0e-196 689.1 794 100.0
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 2.6e-163 580.1 795 93.3
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 2.3e-127 460.7 794 87.2
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 1.5e-126 458.0 794 86.5
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 7.4e-110 402.5 792 83.5
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 2.0e-107 394.4 804 83.0
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.4e-105 388.3 792 83.5
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 6.5e-98 362.8 795 81.6
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 8.5e-90 335.9 712 86.8
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 8.5e-90 335.9 712 86.8
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.9e-89 334.7 678 90.0
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 8.3e-77 292.7 804 73.1
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 3.1e-76 290.8 720 78.3
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 4.3e-73 280.4 763 71.8
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.2e-72 278.9 706 82.2
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 8.0e-72 276.2 670 86.6
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 1.0e-71 275.8 682 83.0
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.5e-70 271.9 682 85.3
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 2.0e-70 271.6 814 74.6
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 4.4e-70 270.4 694 83.0
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 7.5e-70 269.6 681 79.6
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 8.3e-69 266.2 774 76.5
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.1e-68 265.8 705 82.0
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.9e-68 265.0 679 79.5
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.4e-68 264.6 774 76.5
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 2.4e-68 264.6 666 85.6
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 3.2e-68 264.2 702 70.1
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 3.2e-68 264.2 705 81.8
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 3.2e-68 264.2 802 75.4
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.4e-68 263.5 775 76.0
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 7.0e-68 263.1 705 81.8
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.0e-67 261.5 712 77.4
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 1.7e-66 258.5 704 81.8
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.7e-66 258.5 747 75.0
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 2.3e-66 258.1 745 77.0
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 6.6e-66 256.5 712 77.1
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 3.3e-65 254.2 718 76.2
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.3e-65 254.2 677 80.1
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 5.2e-63 246.9 799 70.2
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 3.4e-62 244.2 702 80.8
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 9.8e-62 242.7 280 63.2
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.3e-61 242.3 715 75.7
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 1.3e-61 242.3 706 76.2
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.7e-61 241.9 682 83.6
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 6.4e-61 240.0 670 79.7
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 8.3e-61 239.6 338 69.8
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 8.3e-61 239.6 697 81.9
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.1e-60 239.2 298 70.1
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.5e-59 234.2 659 76.2
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 6.0e-59 233.4 712 75.3
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 7.8e-59 233.0 704 76.3
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 2.3e-58 231.5 770 74.7
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.3e-58 231.5 689 77.5
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 1.9e-57 228.4 691 78.0
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 9.5e-57 226.1 731 77.2
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 9.5e-57 226.1 708 76.0
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 1.2e-56 225.7 146 74.7
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 2.1e-56 224.9 363 56.5
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 2.8e-56 224.6 691 77.9
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.4e-55 222.2 676 82.7
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.8e-55 221.9 696 69.0
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 3.1e-55 221.1 711 75.7
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 4.0e-55 220.7 238 53.8
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 6.8e-55 219.9 688 81.2
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.2e-54 219.2 172 66.9
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.7e-53 215.3 725 73.7
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 4.9e-53 213.8 160 65.6
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 6.4e-53 213.4 668 82.0
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.4e-52 212.2 377 50.1
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 4.1e-52 210.7 632 82.4
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.1e-52 210.7 396 54.8
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.2e-51 209.1 223 52.9
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 2.7e-51 208.0 708 76.7
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 4.6e-51 207.2 707 76.1
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 6.0e-51 206.8 166 63.9
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 6.0e-51 206.8 166 63.9
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 1.3e-50 205.7 166 63.9
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 3.0e-50 204.5 222 52.7
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 5.1e-50 203.8 310 71.9
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 1.5e-49 202.2 125 75.2
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.3e-49 200.7 171 60.2
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 4.3e-49 200.7 140 67.9
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 7.3e-49 199.9 310 64.2
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.2e-48 199.1 160 61.9
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 2.1e-48 198.4 166 62.7
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.8e-48 198.0 166 62.7
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 2.8e-48 198.0 177 56.5
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.7e-48 197.2 181 55.8
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 6.2e-48 196.8 587 91.8
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.1e-47 196.1 401 59.9
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 1.8e-47 195.3 208 52.4
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 1.8e-47 195.3 196 56.1
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 2.4e-47 194.9 166 62.0
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 4.0e-47 194.1 195 51.8
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 1.2e-46 192.6 203 49.8
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 1.5e-46 192.2 164 61.6
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.9e-44 185.3 174 54.0
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 2.4e-44 184.9 237 46.0
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 4.6e-43 180.6 216 44.4
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 6.6e-42 176.8 128 67.2
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 9.6e-41 172.9 170 52.4
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 2.8e-40 171.4 168 54.2
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 1.2e-38 166.0 105 73.3
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 9.9e-38 162.9 282 61.7
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.7e-37 162.2 103 75.7
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 1.9e-36 158.7 105 72.4
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 9.3e-36 156.4 107 71.0
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 2.1e-35 155.2 117 60.7
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 6.6e-34 150.2 110 70.9
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 6.6e-34 150.2 281 59.8
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 8.7e-34 149.8 101 71.3
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 1.1e-33 149.4 107 72.0
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 5.6e-33 147.1 107 67.3
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 9.6e-33 146.4 101 69.3
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 9.6e-33 146.4 329 54.1
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 9.0e-31 139.8 202 41.6
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 5.8e-30 137.1 82 79.3
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.8e-29 134.4 105 61.9
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 6.7e-26 123.6 107 55.1
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 4.3e-25 120.9 81 69.1
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 1.3e-24 119.4 107 58.9
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 5.3e-23 114.0 82 68.3
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 3.4e-22 111.3 96 57.3
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 3.9e-18 97.8 133 42.1
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 2.5e-17 95.1 88 58.0
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 4.3e-17 94.4 67 68.7
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 2.6e-14 85.1 48 85.4
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 5.8e-14 84.0 117 42.7
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 1.0e-13 83.2 59 69.5
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 4.2e-12 77.8 55 70.9
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.0e-10 73.2 50 66.0
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 3.9e-10 71.2 96 32.3
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 1.3e-08 66.2 96 33.3
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 2.2e-08 65.5 102 33.3
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 2.8e-08 65.1 110 27.3
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 2.8e-08 65.1 145 25.5
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 4.8e-08 64.3 101 31.7
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 6.3e-08 63.9 110 29.1
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 1.1e-07 63.2 154 24.0
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 1.1e-07 63.2 159 27.7
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 3.1e-07 61.6 124 29.8
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 4.1e-07 61.2 152 25.0
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 5.3e-07 60.8 100 38.0
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 5.3e-07 60.8 116 30.2
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 6.9e-07 60.5 110 27.3
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 6.9e-07 60.5 123 27.6
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 1.2e-06 59.7 125 27.2
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 1.2e-06 59.7 110 30.0
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 1.5e-06 59.3 110 25.5
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 1.5e-06 59.3 110 25.5
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 1.5e-06 59.3 110 25.5
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 1.5e-06 59.3 110 25.5
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.5e-06 59.3 116 29.3
MELO3C020355.2 Cucumis melo HOM05D007145 ORTHO05D008952 2.0e-06 58.9 159 28.3
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 2.0e-06 58.9 190 26.8
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 2.0e-06 58.9 128 28.9
Lj6g0006889 Lotus japonicus HOM05D007145 ORTHO05D008952 2.6e-06 58.5 79 41.8
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 2.6e-06 58.5 118 30.5
Phvul.004G144600 Phaseolus vulgaris HOM05D007145 ORTHO05D008952 3.4e-06 58.2 63 49.2
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 3.4e-06 58.2 116 30.2
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 5.9e-06 57.4 166 24.1
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 5.9e-06 57.4 116 28.4
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 5.9e-06 57.4 95 33.7
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 7.7e-06 57.0 116 28.4
Glyma.05G142300 Glycine max HOM05D006740 ORTHO05D008571 7.7e-06 57.0 119 27.7
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 7.7e-06 57.0 162 27.8
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 1.0e-05 56.6 116 28.4


User provided reference genes

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