Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.1e-170 603.2 302 100.0
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 3.1e-165 585.1 302 96.0
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 6.9e-157 557.4 303 92.1
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.1e-154 550.1 304 91.1
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 4.2e-146 521.5 302 87.7
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 6.2e-142 507.7 302 84.4
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.5e-140 503.1 302 82.8
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.5e-140 503.1 302 82.8
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.5e-140 503.1 300 83.3
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.4e-138 496.5 303 80.5
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-138 496.5 302 81.5
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 8.7e-136 487.3 302 79.1
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 4.8e-134 481.5 303 78.5
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.8e-133 479.6 307 77.9
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 6.9e-133 477.6 303 77.6
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 6.9e-133 477.6 304 78.3
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.2e-132 476.9 304 78.3
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.5e-132 476.5 304 78.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.6e-132 475.7 306 77.5
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.4e-132 475.3 304 77.3
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.5e-132 474.9 304 77.3
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 2.9e-131 472.2 304 77.3
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 3.8e-131 471.9 304 77.0
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.0e-131 471.5 303 77.6
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.4e-130 469.9 303 75.6
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 4.2e-130 468.4 325 72.9
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 5.5e-130 468.0 302 76.8
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 1.2e-129 466.8 282 80.9
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.9e-128 461.8 303 74.6
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.5e-127 459.1 310 74.5
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 3.3e-127 458.8 303 73.9
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 4.3e-127 458.4 286 75.9
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 4.3e-127 458.4 305 75.4
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 4.3e-127 458.4 305 74.1
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 7.4e-127 457.6 304 76.0
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.6e-126 456.4 305 76.4
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 2.8e-126 455.7 303 75.2
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 4.8e-126 454.9 283 77.7
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.1e-125 453.8 268 82.8
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.8e-125 453.0 306 74.2
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 1.3e-123 446.8 341 68.6
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 6.5e-123 444.5 269 81.4
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.5e-123 444.5 306 73.9
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 2.5e-122 442.6 306 71.9
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.5e-122 441.4 277 78.0
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.5e-122 441.4 288 76.4
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.6e-121 439.9 276 78.3
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 2.1e-121 439.5 322 70.5
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 3.6e-121 438.7 303 71.3
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 6.1e-121 438.0 307 71.7
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 6.1e-121 438.0 303 71.9
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 7.9e-121 437.6 303 71.3
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.4e-120 436.8 303 71.0
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.4e-120 436.8 302 70.2
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.8e-120 436.4 301 70.1
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 8.8e-120 434.1 305 70.8
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 3.3e-119 432.2 312 68.9
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 5.7e-119 431.4 358 64.0
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 7.4e-119 431.0 317 70.7
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.3e-118 430.3 307 71.3
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 8.2e-118 427.6 271 79.0
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 8.2e-118 427.6 303 70.3
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.4e-117 426.8 280 75.4
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.4e-117 426.8 286 71.7
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 4.1e-117 425.2 268 78.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 4.1e-117 425.2 273 76.9
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 2.0e-116 422.9 301 68.4
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.4e-116 422.2 300 72.3
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 3.4e-116 422.2 301 69.1
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.0e-115 420.6 311 68.8
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.9e-115 419.1 302 68.9
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 6.5e-115 417.9 301 69.1
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 6.5e-115 417.9 292 69.5
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.1e-114 417.2 317 67.8
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.9e-114 416.4 303 69.3
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.9e-114 416.4 292 68.5
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.9e-114 416.4 306 68.3
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 5.5e-114 414.8 301 69.8
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 7.2e-114 414.5 288 71.9
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.1e-113 412.9 300 69.0
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 7.9e-113 411.0 266 75.9
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 3.9e-112 408.7 266 75.2
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 5.1e-112 408.3 267 75.3
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 5.7e-111 404.8 303 66.0
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.1e-109 400.6 304 67.4
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.1e-109 399.1 310 66.5
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-108 397.1 306 66.3
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 4.5e-108 395.2 291 69.1
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.9e-108 394.8 279 68.5
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.3e-107 393.7 291 68.7
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.9e-107 392.5 288 70.5
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 6.1e-105 384.8 280 68.6
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.3e-104 382.9 262 69.8
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.5e-103 380.2 291 67.4
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.5e-100 369.0 278 67.3
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.0e-99 367.5 258 70.5
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 6.5e-99 364.8 258 70.5
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 1.1e-98 364.0 278 64.7
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.9e-98 363.2 244 70.5
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.2e-97 360.5 202 88.1
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 3.6e-97 359.0 291 61.9
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 6.8e-96 354.8 258 68.6
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.5e-95 353.6 272 63.2
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 7.5e-95 351.3 262 66.8
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.3e-94 350.5 264 69.3
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 2.8e-94 349.4 261 68.6
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 1.2e-92 344.0 250 68.4
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.9e-90 336.7 248 66.1
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 4.2e-90 335.5 261 64.0
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 9.4e-90 334.3 306 61.8
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 2.7e-89 332.8 249 68.7
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 2.3e-88 329.7 248 64.5
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 8.3e-86 321.2 215 74.9
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 5.9e-84 315.1 216 71.3
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.0e-83 314.3 289 57.1
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.5e-82 309.7 225 67.1
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 3.6e-81 305.8 257 62.3
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.4e-80 303.9 269 58.4
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.2e-77 292.7 248 60.9
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 4.6e-68 262.3 219 61.2
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 8.3e-62 241.5 281 45.9
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 9.2e-61 238.0 280 48.9
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 6.6e-59 231.9 247 51.8
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 4.0e-56 222.6 120 88.3
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 2.6e-47 193.4 121 76.9
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.9e-46 189.9 120 73.3
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.4e-45 186.8 155 61.9
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 6.0e-44 182.2 270 41.1
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.9e-42 177.2 267 39.3
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-35 154.8 149 57.0
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.0e-35 154.8 118 63.6
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 9.6e-34 148.3 83 81.9
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.6e-33 147.5 88 79.5
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 4.5e-31 139.4 108 65.7
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 6.7e-27 125.6 91 67.0
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 4.0e-24 116.3 287 28.6
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.2e-21 106.7 71 71.8
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 3.2e-21 106.7 108 52.8
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 1.0e-19 101.7 306 28.4
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 2.3e-19 100.5 81 65.4
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 3.0e-19 100.1 259 30.1
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 3.0e-19 100.1 216 31.0
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.6e-17 94.4 209 28.7
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.1e-16 91.7 61 68.9
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.3e-14 84.7 93 49.5
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 2.2e-14 84.0 47 83.0
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.4e-13 81.3 309 23.6
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 4.2e-13 79.7 131 39.7
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 5.5e-13 79.3 87 49.4
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 5.5e-13 79.3 309 23.3
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.7e-10 69.3 51 58.8
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.4e-08 64.7 63 57.1
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 5.3e-08 62.8 232 23.3
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 3.4e-07 60.1 42 64.3


User provided reference genes

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