Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G014302 Glycine max HOM05D006749 ORTHO05D013526 1.5e-106 389.8 238 100.0
Dinv38048 Davidia involucrata HOM05D006749 ORTHO05D008352 3.2e-32 142.9 198 62.1
ATR0796G148 Amborella trichopoda HOM05D006749 ORTHO05D008352 5.1e-30 135.6 108 63.0
CAN.G572.47 Capsicum annuum HOM05D006749 ORTHO05D008352 1.2e-26 124.4 143 78.3
A01p37720 Brassica napus HOM05D010856 ORTHO05D013526 1.5e-26 124.0 119 56.3
C01p47740 Brassica napus HOM05D010856 ORTHO05D013526 1.3e-25 120.9 119 54.6
C01p47780 Brassica napus HOM05D010856 ORTHO05D013526 1.3e-25 120.9 119 54.6
C01p47730 Brassica napus HOM05D010856 ORTHO05D013526 3.5e-23 112.8 119 51.3
C01p47760 Brassica napus HOM05D010856 ORTHO05D013526 3.5e-23 112.8 119 51.3
ATR0796G323 Amborella trichopoda HOM05D006749 ORTHO05D008352 1.3e-22 110.9 108 55.6
C01p47770 Brassica napus HOM05D010856 ORTHO05D013526 4.3e-21 105.9 108 53.7
AT3G16010 Arabidopsis thaliana HOM05D006749 ORTHO05D008352 9.6e-21 104.8 64 76.6
Sp3g14360 Schrenkiella parvula HOM05D006749 ORTHO05D008352 9.6e-21 104.8 64 76.6
Solyc12g043100.2 Solanum lycopersicum HOM05D006749 ORTHO05D008352 4.8e-20 102.4 65 76.9
Sopen12g022350 Solanum pennellii HOM05D006749 ORTHO05D008352 4.8e-20 102.4 65 76.9
PGSC0003DMG400031380 Solanum tuberosum HOM05D006749 ORTHO05D008352 4.8e-20 102.4 65 76.9
BraA01t03899Z Brassica rapa HOM05D010856 ORTHO05D013526 9.9e-18 94.7 91 57.1
VMungo1080G0367 Vigna mungo HOM05D006749 ORTHO05D008352 2.2e-17 93.6 54 88.9
Lalb_Chr22g0351261 Lupinus albus HOM05D006749 ORTHO05D008352 2.9e-17 93.2 58 77.6
Phvul.005G171500 Phaseolus vulgaris HOM05D006749 ORTHO05D008352 2.9e-17 93.2 53 88.7
Carub.0003s1574 Capsella rubella HOM05D006749 ORTHO05D008352 1.1e-16 91.3 58 75.9
Peaxi162Scf00034g00085 Petunia axillaris HOM05D006749 ORTHO05D008352 1.1e-16 91.3 60 76.7
Glyma.13G359600 Glycine max HOM05D006749 ORTHO05D008352 1.4e-16 90.9 53 88.7
A03p39640 Brassica napus HOM05D006749 ORTHO05D008352 2.4e-16 90.1 61 70.5
Thhalv10020273m.g Eutrema salsugineum HOM05D006749 ORTHO05D008352 3.2e-16 89.7 57 75.4
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 3.2e-16 89.7 122 77.9
Nitab4.5_0008982g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 4.2e-16 89.4 61 72.1
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 4.2e-16 89.4 122 77.0
AL3G28660 Arabidopsis lyrata HOM05D006749 ORTHO05D008352 5.4e-16 89.0 57 75.4
Psat5g299040 Pisum sativum HOM05D006749 ORTHO05D008352 7.1e-16 88.6 52 84.6
TPR.G37281 Trifolium pratense HOM05D006749 ORTHO05D008352 7.1e-16 88.6 52 84.6
BcaC01g03842 Brassica carinata HOM05D006749 ORTHO05D008352 1.6e-15 87.4 57 73.7
C03p48040 Brassica napus HOM05D006749 ORTHO05D008352 1.6e-15 87.4 57 73.7
BolC3t17083H Brassica oleracea HOM05D006749 ORTHO05D008352 1.6e-15 87.4 57 73.7
Medtr2g102210 Medicago truncatula HOM05D006749 ORTHO05D008352 3.5e-15 86.3 52 82.7
Cpa.g.sc68.20 Carica papaya HOM05D006749 ORTHO05D008352 4.6e-15 85.9 56 75.0
CSS0018907 Camellia sinensis var. sinensis HOM05D006749 ORTHO05D008352 1.3e-14 84.3 54 77.8
Lj3g0002516 Lotus japonicus HOM05D006749 ORTHO05D008352 1.8e-14 84.0 50 82.0
BraA03t13111Z Brassica rapa HOM05D006749 ORTHO05D008352 2.3e-14 83.6 56 69.6
Lj5C60T11 Lonicera japonica HOM05D006749 ORTHO05D008352 2.3e-14 83.6 53 75.5
Dinv30512 Davidia involucrata HOM05D006749 ORTHO05D008352 6.7e-14 82.0 53 73.6
BcaB04g18873 Brassica carinata HOM05D006749 ORTHO05D008352 8.7e-14 81.6 54 74.1
Nn3g16958 Nelumbo nucifera HOM05D006749 ORTHO05D008352 8.7e-14 81.6 53 75.5
MD17G1195500 Malus domestica HOM05D006749 ORTHO05D008352 1.9e-13 80.5 54 72.2
Aa31LG8G3180 Aethionema arabicum HOM05D006749 ORTHO05D008352 2.5e-13 80.1 53 71.7
CARHR091140 Cardamine hirsuta HOM05D006749 ORTHO05D008352 2.5e-13 80.1 54 72.2
BcaC09g48526 Brassica carinata HOM05D010856 ORTHO05D013526 4.3e-13 79.3 75 58.7
Prupe.3G071400 Prunus persica HOM05D006749 ORTHO05D008352 5.6e-13 79.0 52 75.0
RcHm_v2.0_Chr2g0137841 Rosa chinensis HOM05D006749 ORTHO05D008352 5.6e-13 79.0 54 70.4
Actinidia08976 Actinidia chinensis HOM05D006749 ORTHO05D008352 7.4e-13 78.6 52 73.1
Cfa002064 Carpinus fangiana HOM05D006749 ORTHO05D008352 7.4e-13 78.6 53 73.6
Haze_16431 Corylus avellana HOM05D006749 ORTHO05D008352 7.4e-13 78.6 53 73.6
arahy.Tifrunner.gnm1.ann1.8GL56R Arachis hypogaea HOM05D006749 ORTHO05D008352 9.6e-13 78.2 49 75.5
arahy.Tifrunner.gnm1.ann1.TALZ6N Arachis hypogaea HOM05D006749 ORTHO05D008352 9.6e-13 78.2 49 75.5
Aqoxy7G01745 Aquilegia oxysepala HOM05D001061 ORTHO05D007103 1.3e-12 77.8 53 71.7
TWI75G1451 Tripterygium wilfordii HOM05D006749 ORTHO05D008352 1.6e-12 77.4 52 71.2
Thecc.06G087000 Theobroma cacao HOM05D006749 ORTHO05D008352 2.1e-12 77.0 51 72.5
Actinidia24758 Actinidia chinensis HOM05D006749 ORTHO05D008352 2.8e-12 76.6 146 34.9
Cc04_g03450 Coffea canephora HOM05D006749 ORTHO05D008352 2.8e-12 76.6 52 73.1
Nitab4.5_0002438g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 2.8e-12 76.6 53 71.7
CiPaw.02G151100 Carya illinoinensis HOM05D006749 ORTHO05D008352 3.7e-12 76.3 52 73.1
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 3.7e-12 76.3 52 73.1
Ciclev10023415m.g Citrus clementina HOM05D006749 ORTHO05D008352 4.8e-12 75.9 52 71.2
FvH4_6g31160 Fragaria vesca HOM05D006749 ORTHO05D008352 4.8e-12 75.9 54 66.7
FAN02G2386 Fragaria x ananassa HOM05D006749 ORTHO05D008352 4.8e-12 75.9 54 66.7
FAN05G1436 Fragaria x ananassa HOM05D006749 ORTHO05D008352 4.8e-12 75.9 54 66.7
FAN14G3575 Fragaria x ananassa HOM05D006749 ORTHO05D008352 4.8e-12 75.9 54 66.7
Gohir.A06G188200 Gossypium hirsutum HOM05D006749 ORTHO05D008352 4.8e-12 75.9 54 70.4
Atru.chr1.3269 Acer truncatum HOM05D006749 ORTHO05D008352 6.2e-12 75.5 50 74.0
Manes.04G123300 Manihot esculenta HOM05D006749 ORTHO05D008352 6.2e-12 75.5 52 71.2
QL05p024247 Quercus lobata HOM05D006749 ORTHO05D008352 6.2e-12 75.5 50 74.0
TAR626G0678 Trochodendron aralioides HOM05D006749 ORTHO05D008352 6.2e-12 75.5 51 70.6
THA.LOC104817996 Tarenaya hassleriana HOM05D006749 ORTHO05D008352 8.1e-12 75.1 51 70.6
Zm00001eb054940 Zea mays HOM05D006749 ORTHO05D008352 1.4e-11 74.3 52 67.3
Gohir.D06G194300 Gossypium hirsutum HOM05D006749 ORTHO05D008352 1.8e-11 73.9 52 69.2
Gorai.010G228100 Gossypium raimondii HOM05D006749 ORTHO05D008352 1.8e-11 73.9 52 69.2
MBI04_g22013_MAGBIO Magnolia biondii HOM05D006749 ORTHO05D008352 2.4e-11 73.6 52 65.4
vmacro16952 Vaccinium macrocarpon HOM05D006749 ORTHO05D008352 4.0e-11 72.8 51 70.6
MELO3C012957.2 Cucumis melo HOM05D006749 ORTHO05D008352 9.0e-11 71.6 49 67.3
Eucgr.J02992 Eucalyptus grandis HOM05D006749 ORTHO05D008352 9.0e-11 71.6 50 72.0
PSO675G3775 Papaver somniferum HOM05D006749 ORTHO05D008352 1.2e-10 71.2 52 67.3
SHI10915 Sapria himalayana HOM05D006749 ORTHO05D008352 1.2e-10 71.2 52 65.4
Duzib235G0398 Durio zibethinus HOM05D006749 ORTHO05D008352 1.5e-10 70.9 49 71.4
FAN09G1040 Fragaria x ananassa HOM05D006749 ORTHO05D008352 2.0e-10 70.5 51 64.7
CsaV3_3G025150 Cucumis sativus L. HOM05D006749 ORTHO05D008352 2.6e-10 70.1 49 67.3
DCAR_026313 Daucus carota HOM05D006749 ORTHO05D008352 2.6e-10 70.1 48 70.8
PSO229G0046 Papaver somniferum HOM05D006749 ORTHO05D008352 2.6e-10 70.1 52 65.4
ClCG07G013030 Citrullus lanatus HOM05D006749 ORTHO05D008352 3.4e-10 69.7 49 65.3
CDE04G2662 Ceratophyllum demersum HOM05D006749 ORTHO05D008352 4.5e-10 69.3 46 67.4
HPP92_021740 Vanilla planifolia HOM05D006749 ORTHO05D008352 4.5e-10 69.3 49 67.3
Sed0027244 Sechium edule HOM05D006749 ORTHO05D008352 7.6e-10 68.6 50 62.0
PGR102G0966 Punica granatum HOM05D006749 ORTHO05D008352 1.0e-09 68.2 47 68.1
ATR0315G083 Amborella trichopoda HOM05D006749 ORTHO05D008352 4.9e-09 65.9 54 57.4
A01p38490 Brassica napus HOM05D010856 ORTHO05D013526 6.4e-09 65.5 92 45.7
Os02g0266200 Oryza sativa ssp. japonica HOM05D006749 ORTHO05D008352 8.4e-09 65.1 47 66.0
SalBow2G3072 Salvia bowleyana HOM05D006749 ORTHO05D008352 8.4e-09 65.1 52 59.6
Os05g0370000 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D009837 5.5e-08 62.4 136 30.1
MSTRG.11079 Avicennia marina HOM05D006749 ORTHO05D008352 7.1e-08 62.0 49 61.2
ECA248G2906 Erigeron canadensis HOM05D006749 ORTHO05D008352 7.1e-08 62.0 47 63.8
GSVIVG01017111001 Vitis vinifera HOM05D006749 ORTHO05D008352 9.3e-08 61.6 44 63.6
CDE02G3157 Ceratophyllum demersum HOM05D007145 ORTHO05D008952 1.6e-07 60.8 122 32.0
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 1.6e-07 60.8 135 28.1
SGA_v2.0_scaffold5G02592 Striga asiatica HOM05D006749 ORTHO05D008352 1.6e-07 60.8 51 54.9
BcaB04g20915 Brassica carinata HOM05D010856 ORTHO05D013526 2.7e-07 60.1 66 50.0
Thhalv10003852m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.7e-07 60.1 105 29.5
SEGI_33426 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 2.7e-07 60.1 106 36.8
SEGI_33441 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 2.7e-07 60.1 106 36.8
THA.LOC104801797 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.7e-07 60.1 115 29.6
HanXRQChr09g0275241 Helianthus annuus HOM05D006749 ORTHO05D008352 3.5e-07 59.7 48 64.6
SEGI_32921 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 3.5e-07 59.7 51 56.9
AagrBONN_evm.TU.Sc2ySwM_362.2765 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-07 58.9 128 28.9
CANSAT54G2088 Cannabis sativa HOM05D006749 ORTHO05D008352 6.0e-07 58.9 50 62.0
Sp2g14020 Schrenkiella parvula HOM05D000001 ORTHO05D000003 7.9e-07 58.5 100 28.0
Aa31LG2G7360 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.3e-06 57.8 102 28.4
Actinidia36037 Actinidia chinensis HOM05D007405 ORTHO05D009256 1.8e-06 57.4 123 25.2
AL5G12600 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 1.8e-06 57.4 92 28.3
CARHR145400 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.8e-06 57.4 105 29.5
MD07G1059400 Malus domestica HOM05D002890 ORTHO05D009847 1.8e-06 57.4 108 31.5
AT2G02980 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 2.3e-06 57.0 92 28.3
Dinv31682 Davidia involucrata HOM05D000001 ORTHO05D000003 2.3e-06 57.0 115 29.6
BcaC01g02795 Brassica carinata HOM05D003210 ORTHO05D032134 3.0e-06 56.6 107 33.6
PSO761G0432 Papaver somniferum HOM05D001779 ORTHO05D001753 3.0e-06 56.6 135 27.4
Ah.01g005340 Amaranthus hybridus HOM05D006749 ORTHO05D008352 3.9e-06 56.2 49 57.1
AagrBONN_evm.TU.Sc2ySwM_368.768__769 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.9e-06 56.2 111 27.9
EL10Ac9g21998 Beta vulgaris HOM05D006749 ORTHO05D008352 3.9e-06 56.2 50 56.0
PSO017G2345 Papaver somniferum HOM05D002646 ORTHO05D002782 3.9e-06 56.2 112 28.6
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 3.9e-06 56.2 117 30.8
AagrBONN_evm.TU.Sc2ySwM_344.3530 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.1e-06 55.8 116 23.3
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 5.1e-06 55.8 121 28.1
CiPaw.06G085700 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.1e-06 55.8 123 22.8
Nn6g34906 Nelumbo nucifera HOM05D000001 ORTHO05D000003 5.1e-06 55.8 91 30.8
SEGI_06165 Sequoiadendron giganteum HOM05D007655 ORTHO05D009698 5.1e-06 55.8 135 31.9
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 5.1e-06 55.8 120 29.2
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 6.7e-06 55.5 129 33.3
AUR62016443 Chenopodium quinoa HOM05D006749 ORTHO05D008352 6.7e-06 55.5 50 56.0
COL.COLO4_27086 Corchorus olitorius HOM05D001673 ORTHO05D002312 6.7e-06 55.5 92 34.8
Migut.I00863 Erythranthe guttata HOM05D006749 ORTHO05D008352 6.7e-06 55.5 48 56.2
Lj5C194T6 Lonicera japonica HOM05D000001 ORTHO05D000003 6.7e-06 55.5 108 28.7
MBI15_g22638_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D002107 6.7e-06 55.5 95 31.6
MBI15_g35152_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D002107 6.7e-06 55.5 95 31.6
ATR0706G161 Amborella trichopoda HOM05D000001 ORTHO05D000003 8.7e-06 55.1 115 27.8
Cpa.g.sc2635.1 Carica papaya HOM05D000001 ORTHO05D000003 8.7e-06 55.1 141 28.4
MELO3C015821.2 Cucumis melo HOM05D000001 ORTHO05D000003 8.7e-06 55.1 120 25.0
PSO675G2317 Papaver somniferum HOM05D002646 ORTHO05D002782 8.7e-06 55.1 112 28.6
Sabra10G0128600 Salix brachista HOM05D000001 ORTHO05D000003 8.7e-06 55.1 132 20.5


User provided reference genes

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