Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 0.0e+00 1536.2 824 100.0
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 0.0e+00 1121.7 825 71.3
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 5.0e-303 1044.3 820 65.1
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 8.1e-301 1036.9 791 67.5
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 3.1e-300 1035.0 822 65.1
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.7e-298 1029.2 825 67.0
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 2.6e-283 978.8 832 62.7
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 1.5e-278 963.0 837 61.6
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 2.9e-266 922.2 714 66.7
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 1.8e-239 833.2 799 57.3
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 1.8e-239 833.2 799 57.3
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 8.2e-237 824.3 819 54.0
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.1e-228 795.8 815 52.6
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 1.0e-223 780.8 830 51.3
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 8.0e-216 754.6 768 52.7
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 4.8e-213 745.3 786 56.0
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.8e-212 743.4 823 48.6
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.8e-207 726.9 773 52.9
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 6.8e-207 724.9 764 51.0
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.7e-205 720.3 814 54.7
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.4e-204 717.2 827 48.9
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 2.4e-204 716.5 813 53.4
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 9.2e-204 714.5 813 47.6
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.3e-199 699.9 771 50.5
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.6e-198 696.4 821 48.5
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 4.6e-195 685.6 832 46.0
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 7.8e-195 684.9 767 49.0
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 3.0e-194 682.9 802 50.0
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 3.0e-194 682.9 821 46.0
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 3.0e-194 682.9 868 46.5
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.5e-193 680.6 772 47.9
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.4e-191 674.1 847 46.5
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 3.1e-191 672.9 818 49.1
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.1e-191 672.9 780 49.9
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 4.4e-190 669.1 809 45.5
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 2.9e-189 666.4 787 50.6
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.6e-187 660.6 825 43.8
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.1e-184 650.2 771 53.8
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 8.1e-184 648.3 831 44.4
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 1.4e-183 647.5 769 45.9
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 5.2e-183 645.6 825 44.2
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 1.5e-182 644.0 838 43.9
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 4.4e-182 642.5 823 51.9
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 5.8e-182 642.1 761 51.2
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 7.5e-182 641.7 789 45.5
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.1e-180 637.9 794 45.3
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 4.1e-180 636.0 767 47.6
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.6e-179 634.0 777 44.9
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 2.7e-179 633.3 771 49.4
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 3.5e-179 632.9 790 44.9
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.7e-178 630.6 787 45.9
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 7.3e-177 625.2 816 43.6
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 2.8e-176 623.2 793 44.6
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 3.6e-176 622.9 786 45.7
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 8.1e-176 621.7 822 44.2
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 8.1e-176 621.7 770 52.6
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 3.1e-175 619.8 813 44.2
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 3.1e-175 619.8 790 44.7
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 4.0e-175 619.4 791 43.9
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 8.9e-175 618.2 766 44.6
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 2.0e-174 617.1 764 45.4
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 7.6e-174 615.1 745 45.6
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 9.9e-174 614.8 764 45.3
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.7e-173 614.0 766 45.3
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 2.9e-173 613.2 740 49.6
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 3.8e-173 612.8 822 42.8
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.9e-172 610.5 797 43.8
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 4.2e-172 609.4 766 45.6
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 4.6e-171 605.9 811 44.0
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.7e-170 604.0 820 49.3
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 5.6e-169 599.0 898 40.4
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.3e-165 587.8 590 53.9
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 2.1e-163 580.5 789 49.4
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 3.6e-160 569.7 795 45.0
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 2.6e-158 563.5 791 42.7
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 2.3e-154 550.4 839 39.9
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 8.7e-154 548.5 847 39.8
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 1.3e-152 544.7 643 47.1
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 2.0e-150 537.3 813 45.4
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 2.6e-150 537.0 585 49.4
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 4.6e-147 526.2 803 46.0
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 2.3e-146 523.9 607 47.0
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 6.2e-144 515.8 781 40.3
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 6.9e-143 512.3 772 39.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 9.0e-143 511.9 617 45.9
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 8.4e-141 505.4 812 40.5
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 3.5e-139 500.0 808 44.6
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 4.6e-139 499.6 643 43.5
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.0e-138 498.4 610 46.4
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.1e-137 495.0 635 49.0
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 9.0e-135 485.3 266 90.6
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 3.6e-131 473.4 596 45.6
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 8.2e-128 462.2 828 34.3
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 1.2e-123 448.4 352 65.3
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 6.3e-120 436.0 541 45.1
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 3.9e-114 416.8 786 34.7
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 4.5e-110 403.3 536 43.5
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 5.9e-110 402.9 333 62.8
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 2.2e-104 384.4 618 39.3
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 3.6e-99 367.1 452 44.9
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 1.3e-88 332.0 645 37.1
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 2.0e-49 201.8 582 27.3
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 2.0e-49 201.8 582 27.3
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 4.4e-49 200.7 258 44.6
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 1.7e-48 198.7 780 31.7
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 3.9e-45 187.6 336 37.2
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 3.3e-44 184.5 627 24.2
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 9.6e-44 183.0 118 77.1
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 2.8e-43 181.4 407 32.7
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 6.9e-42 176.8 759 29.2
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 4.6e-38 164.1 146 67.8
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 4.8e-35 154.1 159 52.2
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 3.1e-34 151.4 469 26.7
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 4.2e-31 141.0 595 23.9
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 2.3e-29 135.2 132 55.3
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 2.3e-29 135.2 132 55.3
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.3e-27 129.4 132 52.3
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 1.0e-24 119.8 88 68.2
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 4.6e-22 110.9 113 49.6
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 6.1e-22 110.5 114 49.1
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 4.5e-09 67.8 71 50.7
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 3.2e-07 61.6 75 44.0
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 1.6e-06 59.3 57 45.6
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 1.6e-06 59.3 59 44.1
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 2.1e-06 58.9 54 48.1
Lsat_1_v5_gn_5_130920 Lactuca sativa HOM05D001159 ORTHO05D011576 2.1e-06 58.9 54 48.1
Lsat_1_v5_gn_1_129260 Lactuca sativa HOM05D005833 ORTHO05D011576 2.7e-06 58.5 55 47.3
Lsat_1_v5_gn_0_17581 Lactuca sativa HOM05D000524 ORTHO05D011576 3.6e-06 58.2 58 46.6
Lsat_1_v5_gn_0_21360 Lactuca sativa HOM05D001049 ORTHO05D015148 6.1e-06 57.4 54 46.3
Lsat_1_v5_gn_4_72121 Lactuca sativa HOM05D018531 ORTHO05D011576 6.1e-06 57.4 57 43.9
Lsat_1_v5_gn_9_108561 Lactuca sativa HOM05D018531 ORTHO05D011576 6.1e-06 57.4 57 43.9
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 7.9e-06 57.0 58 46.6
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 7.9e-06 57.0 52 48.1
Thecc.09G153300 Theobroma cacao HOM05D006258 ORTHO05D007961 7.9e-06 57.0 167 19.8


User provided reference genes

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