Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 1.6e-192 676.0 363 100.0
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 2.0e-174 615.9 360 90.8
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.0e-159 567.0 360 85.3
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 1.8e-156 556.2 360 84.2
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.3e-151 539.3 364 79.4
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 5.5e-145 518.1 363 78.0
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 3.6e-144 515.4 365 75.9
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 8.6e-138 494.2 369 74.8
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 6.8e-135 484.6 382 72.5
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 3.0e-130 469.2 360 69.2
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 8.6e-130 467.6 365 70.1
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 8.6e-130 467.6 365 70.1
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.5e-129 466.8 365 69.3
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.8e-127 459.9 356 69.1
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.0e-126 456.4 365 67.9
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.7e-125 453.4 367 65.7
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 2.9e-125 452.6 362 66.9
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 6.4e-125 451.4 364 66.5
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.4e-124 450.3 367 68.9
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.9e-124 449.9 361 66.8
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.4e-124 449.5 363 66.7
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 3.2e-124 449.1 365 67.9
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 5.4e-124 448.4 367 64.6
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 9.2e-124 447.6 379 63.1
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 1.2e-123 447.2 381 63.3
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.6e-123 446.8 363 67.5
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.7e-123 446.0 364 66.5
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 7.8e-123 444.5 361 66.5
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 7.8e-123 444.5 361 66.5
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 7.8e-123 444.5 367 66.5
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-122 443.7 363 66.7
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 5.0e-122 441.8 365 65.2
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 5.0e-122 441.8 361 65.7
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.0e-122 441.8 363 66.4
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 8.6e-122 441.0 368 66.6
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.9e-121 439.9 386 65.5
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.6e-120 435.6 362 65.5
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 8.1e-120 434.5 364 64.6
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 4.0e-119 432.2 363 65.3
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 8.9e-119 431.0 368 67.9
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 8.9e-119 431.0 364 64.8
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 2.0e-118 429.9 356 66.0
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 2.6e-118 429.5 360 65.3
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.4e-118 428.7 380 63.2
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.7e-117 426.8 365 65.5
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 4.9e-117 425.2 362 63.3
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.1e-116 424.1 368 64.4
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 1.1e-116 424.1 361 65.4
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.9e-116 423.3 362 63.3
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.4e-116 422.9 368 63.0
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 9.2e-116 421.0 368 65.5
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.2e-115 420.6 380 62.1
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.6e-115 420.2 362 61.9
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 6.0e-115 418.3 357 64.7
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 7.8e-115 417.9 365 63.8
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.0e-114 417.5 360 63.3
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.7e-114 416.8 360 63.3
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.9e-114 415.6 363 63.6
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 8.6e-114 414.5 362 62.2
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.2e-112 410.6 363 62.5
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.2e-112 410.6 357 62.7
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.2e-112 410.6 363 62.0
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.6e-112 410.2 363 62.3
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 6.2e-112 408.3 365 63.6
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 5.2e-111 405.2 363 61.4
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 6.8e-111 404.8 359 63.2
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.6e-110 402.9 394 58.9
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 2.6e-110 402.9 380 59.7
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 4.4e-110 402.1 380 59.5
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 4.4e-110 402.1 428 54.2
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.3e-109 400.6 363 60.6
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.7e-109 400.2 365 61.9
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.2e-109 399.8 360 59.7
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.1e-108 397.5 360 60.6
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.9e-108 396.7 356 62.4
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.7e-107 392.9 366 61.7
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.3e-106 390.6 363 60.1
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.3e-106 389.8 362 58.8
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 6.6e-106 388.3 340 65.9
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 6.6e-106 388.3 377 59.9
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 3.3e-105 386.0 363 59.0
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 1.1e-103 380.9 365 58.6
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.4e-103 380.6 365 59.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 4.0e-103 379.0 364 58.2
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 6.9e-103 378.3 357 59.9
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.5e-102 377.1 365 59.2
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 2.0e-102 376.7 384 58.1
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.7e-101 373.6 372 58.1
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 8.4e-101 371.3 386 55.4
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 6.0e-99 365.2 383 56.1
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 7.8e-99 364.8 430 50.2
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 7.8e-99 364.8 343 62.1
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 3.6e-96 355.9 387 54.5
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.8e-95 353.6 390 53.1
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 2.4e-95 353.2 387 55.0
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.1e-95 352.8 362 56.9
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 4.0e-95 352.4 383 53.3
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 5.3e-95 352.1 364 58.5
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 6.9e-95 351.7 383 53.3
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 3.4e-94 349.4 374 51.3
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.8e-93 345.9 366 57.9
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.9e-93 345.5 366 57.9
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.4e-92 343.2 371 54.7
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 4.2e-92 342.4 340 54.7
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 5.1e-90 335.5 301 64.8
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.4e-87 327.4 383 53.8
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.4e-86 322.8 384 52.9
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 5.8e-86 322.0 383 50.9
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 9.9e-86 321.2 383 50.7
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.7e-85 320.5 383 51.7
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.7e-85 320.5 383 51.7
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.1e-84 317.8 357 52.7
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 6.0e-83 312.0 380 51.3
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 8.7e-82 308.1 365 52.9
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 9.7e-73 278.1 337 49.9
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.3e-72 277.7 189 76.7
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.1e-71 274.6 246 63.4
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 9.0e-71 271.6 239 62.8
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 2.0e-70 270.4 391 41.7
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.7e-64 250.8 364 45.3
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 3.4e-62 243.0 431 38.1
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.5e-54 216.5 346 38.4
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.8e-47 194.1 314 42.7
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 2.2e-45 187.2 210 49.5
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.4e-42 177.9 360 34.4
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.0e-34 151.8 157 56.7
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.4e-34 151.4 121 66.1
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 5.7e-33 146.0 116 63.8
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 5.0e-21 106.3 400 28.0
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 4.3e-20 103.2 440 24.3
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.2e-19 101.7 101 52.5
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.2e-17 95.1 117 50.4
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 9.8e-17 92.0 67 64.2
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 4.9e-16 89.7 56 82.1
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 1.1e-12 78.6 56 71.4
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 3.3e-12 77.0 259 28.2
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.1e-11 74.3 60 68.3
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 2.3e-10 70.9 61 67.2
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 6.8e-10 69.3 61 65.6
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 6.8e-10 69.3 47 66.0
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 4.4e-09 66.6 60 65.0
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 2.4e-07 60.8 416 26.4


User provided reference genes

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