Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 8.2e-157 557.4 363 100.0
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 1.2e-131 473.8 363 77.7
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 4.3e-89 332.4 402 63.2
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 4.9e-77 292.4 372 59.1
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 1.5e-70 270.8 363 47.4
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 2.7e-67 260.0 369 49.1
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.1e-63 248.1 399 43.1
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 3.8e-61 239.6 370 49.7
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 7.0e-55 218.8 359 43.2
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 7.4e-49 198.7 364 51.9
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 1.4e-47 194.5 389 44.2
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 7.5e-41 172.2 400 45.0
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 2.8e-40 170.2 394 40.1
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 8.5e-37 158.7 399 44.9
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.6e-35 154.5 396 35.1
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 3.6e-35 153.3 368 35.1
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 5.2e-34 149.4 416 32.5
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 6.8e-34 149.1 398 42.7
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 6.8e-34 149.1 399 39.3
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 5.7e-33 146.0 327 35.2
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 9.8e-33 145.2 411 32.4
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.3e-29 134.8 386 31.3
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 1.7e-29 134.4 391 35.8
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 5.0e-29 132.9 420 39.3
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.9e-28 131.0 405 35.3
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 2.8e-27 127.1 376 32.2
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 1.0e-26 125.2 362 36.5
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 4.0e-26 123.2 370 33.0
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 2.0e-25 120.9 395 31.9
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.3e-24 118.2 389 32.9
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.8e-24 117.1 388 32.7
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 3.7e-24 116.7 382 38.2
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 8.3e-24 115.5 190 42.6
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 2.4e-23 114.0 400 31.0
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 3.1e-23 113.6 359 42.1
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 4.1e-23 113.2 434 32.5
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 4.1e-23 113.2 385 34.8
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 3.5e-22 110.2 378 32.5
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 5.9e-22 109.4 398 35.9
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 7.8e-22 109.0 369 40.4
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 3.9e-21 106.7 375 31.7
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 3.9e-21 106.7 365 32.1
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 5.6e-20 102.8 375 39.2
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 7.3e-20 102.4 367 30.5
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 3.6e-19 100.1 389 32.6
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 8.0e-19 99.0 194 38.7
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.0e-18 98.6 366 38.5
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.0e-18 98.6 379 29.0
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.3e-18 97.4 377 37.7
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 3.1e-18 97.1 377 28.9
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 4.0e-18 96.7 360 33.3
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 4.0e-18 96.7 351 33.9
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 6.8e-18 95.9 380 38.7
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.2e-17 95.1 383 32.9
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.0e-17 94.4 377 28.6
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 5.8e-17 92.8 366 33.9
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 5.8e-17 92.8 367 29.7
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 7.5e-17 92.4 382 29.1
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 1.3e-16 91.7 366 30.3
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 3.7e-16 90.1 374 30.7
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 6.4e-16 89.4 379 30.6
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.1e-15 88.6 390 37.7
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.1e-15 88.6 390 36.9
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.9e-15 87.8 390 32.8
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 2.4e-15 87.4 383 36.3
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 3.2e-15 87.0 365 29.6
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.2e-14 85.1 379 30.1
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 1.2e-14 85.1 365 28.8
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 1.6e-14 84.7 377 30.8
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 4.6e-14 83.2 377 30.0
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 4.6e-14 83.2 377 30.0
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 6.0e-14 82.8 364 29.4
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.0e-13 82.0 378 30.4
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.3e-13 81.6 421 32.8
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 2.3e-13 80.9 368 30.7
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 3.9e-13 80.1 376 33.5
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 3.9e-13 80.1 380 28.9
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 8.6e-13 79.0 367 30.0
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.1e-12 78.6 435 29.9
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.1e-12 78.6 187 33.2
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.1e-12 78.6 365 34.2
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 1.1e-12 78.6 388 33.0
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.1e-12 78.6 362 35.6
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 3.3e-12 77.0 360 29.2
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 5.6e-12 76.3 377 28.4
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 9.5e-12 75.5 106 46.2
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.2e-11 75.1 382 28.0
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.6e-11 74.7 189 33.3
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 2.1e-11 74.3 413 36.1
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 2.1e-11 74.3 84 48.8
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 3.6e-11 73.6 192 34.4
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 3.6e-11 73.6 74 52.7
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 6.2e-11 72.8 366 29.2
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 6.2e-11 72.8 194 34.5
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 8.0e-11 72.4 379 27.7
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 2.3e-10 70.9 403 29.0
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.3e-10 70.9 141 36.9
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 4.0e-10 70.1 452 27.9
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 6.8e-10 69.3 209 35.4
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.2e-09 68.6 377 35.5
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 1.2e-09 68.6 415 37.8
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 1.5e-09 68.2 362 26.8
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.5e-09 68.2 305 27.5
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 7.5e-09 65.9 361 25.5
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 2.2e-08 64.3 192 36.5
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 4.9e-08 63.2 79 43.0
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.1e-07 62.0 398 41.0
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 3.2e-07 60.5 375 29.6
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 4.1e-07 60.1 83 41.0
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 5.4e-07 59.7 461 27.8
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.2e-06 58.5 196 31.1
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 1.6e-06 58.2 75 45.3
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.6e-06 58.2 157 31.8
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 7.8e-06 55.8 76 40.8


User provided reference genes

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